Structure #152350
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr5 |
| Strand | - |
| Position | 141,211,064 - 141,211,179 |
| Number of sequences | 4 |
| Organisms | human, dog, mouse, rat |
| Mean pairwise identity | 75.04 |
| Columns | 120 |
| Mean single MFE | -44.02 |
| Consensus MFE | -22.24 |
| Combinations/base pair | 42 / 30 = 1.40 |
| SCI | 0.51 |
| z-score | -2.44 |
| RNA class probability | 0.942808 |
This structure is part of cluster 84280
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 75.04 Mean single sequence MFE: -44.02 Consensus MFE: -22.24 Energy contribution: -21.55 Covariance contribution: -0.69 Mean z-score: -2.44 Structure conservation index: 0.51 SVM decision value: 1.31 SVM RNA-class probability: 0.942808 Prediction: RNA ###################################################################### >hg17.chr5/141211179-141211064 GGUAUAUGGGGACAUAUUUCUCUCCUAGGGUCCUUGAAGCAUGUUUCACAUUCCGGGGUGGGGGGAAGUUCUCUGGGCAUCCCUCACCUCUGGGGUCUCUCUAGGCCCUAUCUCU ((.(((((....))))).)).....(((((((..(((((....))))).((((((((((((((((..(((.....))).))))))))).))))))).......)))))))..... ( -43.90) >canFam1.chr2/37412100-37411993 GGUAUAUGGGGACAUAUUUCCGGGGGUCCCUGAAGCGUGUCUCACAUCCCCGGGGGAGGGUCUCUGGGGCAUCUCUCACCUCUGGGGGCUCCCUAGGCCCUAUCUCU ((.(((((....)))))..))((((((((((..((.(((........(((((((((....))))))))).......)))))..)))))))))).............. ( -48.36) >mm5.chr18/38630064-38629953 GGUAUGUGGGGACAUAUUUCCCAGGGUCCCUGAAGAAGCAUCUCUCACAUCAGGAGGGGAGCUGUUUCUAGGCAUCCUGAACCUGGGGGAACCUCCCUACUCCUUAUGUCU ((...(((((((....(..((((((.(((((((((.(((..(((((.......)))))..))).)))).)))......)).))))))..)...))))))).))........ ( -43.40) >rn3.chr18/859-751 GGUAUGUGGGGACACAUUUCCUAGGGUCCCCGAAGAAGCAUCUCUCACAUCAGGAGGGGAGCUGUUUCUAGGCAUCCUGAACCUGGGGGCUCCCUACUCCUUAUAUCU ((.(((((....)))))..))(((((.((((((((.(((..(((((.......)))))..))).))))((((.........))))))))..)))))............ ( -40.40) >consensus GGUAUAUGGGGACAUAUUUCCC____AGGGUCCCUGAAG___CAUCUCUCACAUC___AGGAGGGGAGCUGUU_UCUAGG_CAUCCCGAACCUCUGGGGGC_UCCCUACGCCCUAUCUCU ((.(((((....)))))..)).....((((.((((..((.(((.((((((.(.......))))))).))).......(((....)))....))..))))....))))............. (-22.24 = -21.55 + -0.69)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
