Structure #152353

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	-
Position	141,211,102 - 141,211,219
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	79.4
Columns	120
Mean single MFE	-46.88
Consensus MFE	-29.73
Combinations/base pair	48 / 38 = 1.26
SCI	0.63
z-score	-2.81
RNA class probability	0.994715

This structure is part of cluster 84280

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  79.40
 Mean single sequence MFE: -46.88
 Consensus MFE: -29.73
 Energy contribution: -31.22
 Covariance contribution:   1.50
 Mean z-score:  -2.81
 Structure conservation index:   0.63
 SVM decision value:   2.50
 SVM RNA-class probability: 0.994715
 Prediction: RNA

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>hg17.chr5/141211219-141211102
CCAUCCCCCUACUUCAGGGCAUGUCUCUCCGUAGGGGGAGGGUAUAUGGGGACAUAUUUCUCUCCUAGGGUCCUUGAAGCAUGUUUCACAUUCCGGGGUGGGGGGAAGUUCUCUGGG
(((((((((((((((.(((((((..((.((.((((((.((((.(((((....))))))))))))))).)).....))..)))))........)))))))))))))).......))). ( -51.81)
>canFam1.chr2/37412140-37412032
CCAACCCCCUACUUCAGAGCAUGUCUCUUGGUAGGGGGAGGGUAUAUGGGGACAUAUUUCCGGGGGUCCCUGAAGCGUGUCUCACAUCCCCGGGGGAGGGUCUCUGGG
((..(((((((((..((((.....)))).)))))))))..))...(((((((((..((((.(((...))).))))..)))))).))).((((((((....)))))))) ( -50.40)
>mm5.chr18/38630104-38629992
CCAUCUCUCUACUUCAGAGCAUGUCUGUUAGUAGGGGAAGGGUAUGUGGGGACAUAUUUCCCAGGGUCCCUGAAGAAGCAUCUCUCACAUCAGGAGGGGAGCUGUUUCUAGG
((.((((.(((((.((((.....))))..))))))))).(((.(((((....)))))..))).))...(((((((.(((..(((((.......)))))..))).)))).))) ( -42.60)
>rn3.chr18/899-787
CCAUCUCUCUACUUCAGAGCAUGUCUGUUAGUAGGGGAAGGGUAUGUGGGGACACAUUUCCUAGGGUCCCCGAAGAAGCAUCUCUCACAUCAGGAGGGGAGCUGUUUCUAGG
((.((((.(((((.((((.....))))..)))))))))((((.(((((....))))).)))).))....((..(((((((.(((((.(....)...))))).))))))).)) ( -42.70)
>consensus
CCAUCCCCCUACUUCAGAGCAUGUCUCUUAGUAGGGGAAGGGUAUAUGGGGACAUAUUUCCC____AGGGUCCCUGAAG___CAUCUCUCACAUC___AGGAGGGGAGCUGUU_UCUAGG
((.(((((((((..((((.....))))...)))))))))(((.(((((....))))).)))......))..(((.((...(((.((((((.(.......))))))).)))....)).))) (-29.73 = -31.22 +   1.50)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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