Structure #152357

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	+
Position	141,211,139 - 141,211,259
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	87.84
Columns	120
Mean single MFE	-45.08
Consensus MFE	-33.26
Combinations/base pair	35 / 32 = 1.09
SCI	0.74
z-score	-3.31
RNA class probability	0.970709

This structure is part of cluster 84280

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  87.84
 Mean single sequence MFE: -45.08
 Consensus MFE: -33.26
 Energy contribution: -34.82
 Covariance contribution:   1.56
 Mean z-score:  -3.31
 Structure conservation index:   0.74
 SVM decision value:   1.66
 SVM RNA-class probability: 0.970709
 Prediction: RNA

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>hg17.chr5/141211139-141211259
CUUCAAGGACCCUAGGAGAGAAAUAUGUCCCCAUAUACCCUCCCCCUACGGAGAGACAUGCCCUGAAGUAGGGGGAUGGGGACCGACUAGGUCCCCUCUGGGAAGACACAGACUGGGUC
.......(((((.((...(....).((((((((.......(((((((((..((.(......)))...))))))))).(((((((.....)))))))..))))..))))....))))))) ( -48.20)
>canFam1.chr2/37412064-37412180
CUUCAGGGACCCCCGGAAAUAUGUCCCCAUAUACCCUCCCCCUACCAAGAGACAUGCUCUGAAGUAGGGGGUUGGGAACCAACUAGGUCCCCUCUAGGAAGACACUGACUGGGUC
.....((((((...((..(((((....))))).(((.((((((((..((((.....))))...))))))))..)))..)).....)))))).(((((..((...))..))))).. ( -44.40)
>mm5.chr18/38630028-38630144
UCUUCAGGGACCCUGGGAAAUAUGUCCCCACAUACCCUUCCCCUACUAACAGACAUGCUCUGAAGUAGAGAGAUGGGGACCAACUUGGUCCCCUCUAGGAAGACACUGACUGGGUC
........(((((.((((......))))........(((((.(((((..((((.....)))).)))))..(((.(((((((.....)))))))))).))))).........))))) ( -43.50)
>rn3.chr18/823-939
UCUUCGGGGACCCUAGGAAAUGUGUCCCCACAUACCCUUCCCCUACUAACAGACAUGCUCUGAAGUAGAGAGAUGGGGACCAACUUGGUCCCCUCUAGGAAGACACUGACUGGGUC
((....))(((((.((...(((((....)))))...(((((.(((((..((((.....)))).)))))..(((.(((((((.....)))))))))).))))).......))))))) ( -44.20)
>consensus
_CUUCAGGGACCCU____GGGAAAUAUGUCCCCACAUACCCUCCCCCUACUAACAGACAUGCUCUGAAGUAGAGAGAUGGGGACCAACUAGGUCCCCUCUAGGAAGACACUGACUGGGUC
........(((((..........(((((....)))))..(((((((((((..((((.....))))...))))))))..(((((((.....)))))))...)))............))))) (-33.26 = -34.82 +   1.56)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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