Structure #152362

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	+
Position	141,211,179 - 141,211,295
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	90.14
Columns	120
Mean single MFE	-51.25
Consensus MFE	-39.55
Combinations/base pair	33 / 33 = 1.00
SCI	0.77
z-score	-2.7
RNA class probability	0.936561

This structure is part of cluster 84280

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  90.14
 Mean single sequence MFE: -51.25
 Consensus MFE: -39.55
 Energy contribution: -40.80
 Covariance contribution:   1.25
 Mean z-score:  -2.70
 Structure conservation index:   0.77
 SVM decision value:   1.25
 SVM RNA-class probability: 0.936561
 Prediction: RNA

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>hg17.chr5/141211179-141211295
CUCCCCCUACGGAGAGACAUGCCCUGAAGUAGGGGGAUGGGGACCGACUAGGUCCCCUCUGGGAAGACACAGACUGGGUCAGGCUGGGUUUGAGGGGGGCUCUCCUCUGGCCAAAU
...(((((.(((((...(((.((((......)))).)))((((((.....)))))))))))........((((((.((.....)).)))))))))))((((.......)))).... ( -51.80)
>canFam1.chr2/37412100-37412220
CUCCCCCUACCAAGAGACAUGCUCUGAAGUAGGGGGUUGGGAACCAACUAGGUCCCCUCUAGGAAGACACUGACUGGGUCAGGCUGGGUUUGGGGGGGGGGGGGUCUCCCCUGGCCAAAU
...(((((((..((((.....))))...)))))))(((((...)))))..(((((((((((((.((...(((((...))))).))...))))))))))(((((....))))).))).... ( -54.70)
>mm5.chr18/38630064-38630181
CUUCCCCUACUAACAGACAUGCUCUGAAGUAGAGAGAUGGGGACCAACUUGGUCCCCUCUAGGAAGACACUGACUGGGUCAGGCUGGGUUUGAGGGGGGGGUCUCCUCUGGCCAAAU
(((((.(((((..((((.....)))).)))))..(((.(((((((.....)))))))))).)))))...(((((...)))))....(((..((((((.....))))))..))).... ( -49.90)
>rn3.chr18/859-974
CUUCCCCUACUAACAGACAUGCUCUGAAGUAGAGAGAUGGGGACCAACUUGGUCCCCUCUAGGAAGACACUGACUGGGUCAGGCUGGGUUUGAGGGGGGUCUCCUCUGGCCAAAU
(((((.(((((..((((.....)))).)))))..(((.(((((((.....)))))))))).)))))...(((((...)))))....(((..((((((...))))))..))).... ( -48.60)
>consensus
CUCCCCCUACUAACAGACAUGCUCUGAAGUAGAGAGAUGGGGACCAACUAGGUCCCCUCUAGGAAGACACUGACUGGGUCAGGCUGGGUUUGA____GGGGGGGUCUCCUCUGGCCAAAU
...(((((.....(((((..((.((((..(((......(((((((.....)))))))(((....)))......)))..))))))...))))).....)))))((((......)))).... (-39.55 = -40.80 +   1.25) 

	

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Consensus structure

Secondary structure graph

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Montain plot

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Dotplot

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