Structure #152369
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr5 |
| Strand | + |
| Position | 141,211,219 - 141,211,334 |
| Number of sequences | 4 |
| Organisms | human, dog, mouse, rat |
| Mean pairwise identity | 93.1 |
| Columns | 120 |
| Mean single MFE | -44.3 |
| Consensus MFE | -35.24 |
| Combinations/base pair | 37 / 34 = 1.09 |
| SCI | 0.8 |
| z-score | -1.66 |
| RNA class probability | 0.540301 |
This structure is part of cluster 84280
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 93.10 Mean single sequence MFE: -44.30 Consensus MFE: -35.24 Energy contribution: -35.42 Covariance contribution: 0.19 Mean z-score: -1.66 Structure conservation index: 0.80 SVM decision value: 0.01 SVM RNA-class probability: 0.540301 Prediction: RNA ###################################################################### >hg17.chr5/141211219-141211334 GGACCGACUAGGUCCCCUCUGGGAAGACACAGACUGGGUCAGGCUGGGUUUGAGGGGGGCUCUCCUCUGGCCAAAUGUCGCCUAUUGGUACAUAAAACUGUACGCGACACAGGCA (((((.....)))))((((((........))))..))....(.((((((..((((((....))))))..)))...(((((((....)(((((......)))))))))))))).). ( -45.00) >canFam1.chr2/37412140-37412260 GAACCAACUAGGUCCCCUCUAGGAAGACACUGACUGGGUCAGGCUGGGUUUGGGGGGGGGGGGGUCUCCCCUGGCCAAAUGUCGUCUAUUUGUACAUAAAACUGUACGCGACACAAGGCA ..(((.....)))((((((((((.((...(((((...))))).))...))))))))))(((((....))))).(((...((((((......(((((......)))))))))))...))). ( -46.50) >mm5.chr18/38630104-38630221 GGACCAACUUGGUCCCCUCUAGGAAGACACUGACUGGGUCAGGCUGGGUUUGAGGGGGGGGUCUCCUCUGGCCAAAUGUCGCCUAUUGGUACAUAAAACUGUACGCGACACAAGGCA (((((.....)))))((....))..(((((((((...)))))....(((..((((((.....))))))..)))...))))((((.((((((((......))))).)))....)))). ( -43.50) >rn3.chr18/899-1014 GGACCAACUUGGUCCCCUCUAGGAAGACACUGACUGGGUCAGGCUGGGUUUGAGGGGGGUCUCCUCUGGCCAAAUGUCGCCUAUUGGUACAUAAAACUGUACGCGACACAAGGCA (((((.....)))))((....))..(((((((((...)))))....(((..((((((...))))))..)))...))))((((.((((((((......))))).)))....)))). ( -42.20) >consensus GGACCAACUAGGUCCCCUCUAGGAAGACACUGACUGGGUCAGGCUGGGUUUGA____GGGGGGGUCUCCUCUGGCCAAAUGUCGCCUAUUGGUACAUAAAACUGUACGCGACACAAGGCA (((((..((((..((..((.((.......))))..))..))))...)))))......(((((....)))))..(((...((((((......(((((......)))))))))))...))). (-35.24 = -35.42 + 0.19)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
