Structure #152373

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	-
Position	141,211,259 - 141,211,374
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	90.14
Columns	120
Mean single MFE	-35.53
Consensus MFE	-29.54
Combinations/base pair	32 / 29 = 1.10
SCI	0.83
z-score	-1.43
RNA class probability	0.569888

This structure is part of cluster 84280

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  90.14
 Mean single sequence MFE: -35.53
 Consensus MFE: -29.54
 Energy contribution: -29.85
 Covariance contribution:   0.31
 Mean z-score:  -1.43
 Structure conservation index:   0.83
 SVM decision value:   0.07
 SVM RNA-class probability: 0.569888
 Prediction: RNA

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>hg17.chr5/141211374-141211259
CUAUCCCUGUGGGUCCUAGGUCUGUGAAGCCCCUCCCCAAUGCCUGUGUCGCGUACAGUUUUAUGUACCAAUAGGCGACAUUUGGCCAGAGGAGAGCCCCCCUCAAACCCAGCCU
...((((((((((.....((.((....))))....))))..(((.((((((((((((......)))))(....))))))))..)))))).)))(((.....)))........... ( -33.50)
>canFam1.chr2/37412300-37412180
CCACCCCUGUUGGUCCUAGGUCUGUGAAGUCCUUCCCCAAUGCCUUGUGUCGCGUACAGUUUUAUGUACAAAUAGACGACAUUUGGCCAGGGGAGACCCCCCCCCCCCCAAACCCAGCCU
...((((((((((....(((.((....)).)))...)))).(((..((((((((((((......))))).....).))))))..)))))))))........................... ( -36.70)
>mm5.chr18/38630261-38630144
CUAGCUUUGUUGGUCCUAGGUCUGUGAGACCCCUCCCCGAUGCCUUGUGUCGCGUACAGUUUUAUGUACCAAUAGGCGACAUUUGGCCAGAGGAGACCCCCCCCUCAAACCCAGCCU
........(((((.....((((.....)))).((((.(...(((..((((((((((((......)))))(....))))))))..)))..).))))...............))))).. ( -37.80)
>rn3.chr18/1054-939
CUAGCUUUGUUGGUCCUAGGUCUGUGAGAUCCCUCCCCAAUGCCUUGUGUCGCGUACAGUUUUAUGUACCAAUAGGCGACAUUUGGCCAGAGGAGACCCCCCUCAAACCCAGCCU
...(((..(((.......(((((..(((....)))((....(((..((((((((((((......)))))(....))))))))..)))....))))))).......)))..))).. ( -34.14)
>consensus
CUAGCCCUGUUGGUCCUAGGUCUGUGAAACCCCUCCCCAAUGCCUUGUGUCGCGUACAGUUUUAUGUACCAAUAGGCGACAUUUGGCCAGAGGAGACCCCCCC____UCAAACCCAGCCU
........(((((.....((((.....)))).((((.(...(((..((((((((((((......)))))......)))))))..)))..).))))..................))))).. (-29.54 = -29.85 +   0.31)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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