Structure #152375
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr5 |
| Strand | + |
| Position | 141,211,295 - 141,211,409 |
| Number of sequences | 4 |
| Organisms | human, dog, mouse, rat |
| Mean pairwise identity | 88.56 |
| Columns | 120 |
| Mean single MFE | -41.05 |
| Consensus MFE | -35.34 |
| Combinations/base pair | 35 / 32 = 1.09 |
| SCI | 0.86 |
| z-score | -2.42 |
| RNA class probability | 0.978265 |
This structure is part of cluster 84280
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 88.56 Mean single sequence MFE: -41.05 Consensus MFE: -35.34 Energy contribution: -35.65 Covariance contribution: 0.31 Mean z-score: -2.42 Structure conservation index: 0.86 SVM decision value: 1.81 SVM RNA-class probability: 0.978265 Prediction: RNA ###################################################################### >hg17.chr5/141211295-141211409 GUCGCCUAUUGGUACAUAAAACUGUACGCGACACAGGCAUUGGGGAGGGGCUUCACAGACCUAGGACCCACAGGGAUAGUCCCCAGUGCUGUCGCCAACCCCUGCCCACCUUUG ((((((....)(((((......))))))))))..(((...((((.(((((....((((..((.((((((....))...))))..))..))))......))))).)))))))... ( -40.00) >canFam1.chr2/37412220-37412336 GUCGUCUAUUUGUACAUAAAACUGUACGCGACACAAGGCAUUGGGGAAGGACUUCACAGACCUAGGACCAACAGGGGUGGUCCCCAGUGCUGUCACCUAUCCCCUGCCCACCUUUG (((((......(((((......))))))))))....((((..((((((((.....((((..((.((((((.......))))))..))..))))..))).)))))))))........ ( -39.70) >mm5.chr18/38630181-38630301 GUCGCCUAUUGGUACAUAAAACUGUACGCGACACAAGGCAUCGGGGAGGGGUCUCACAGACCUAGGACCAACAAAGCUAGUCCCUAGUGCUGUCUGUCACCCACCCCCUGCCCACCUUUG ((((((....)(((((......))))))))))....((((..((((..((((...(((((((((((((...........)).)))))....)))))).))))..))))))))........ ( -44.50) >rn3.chr18/974-1090 GUCGCCUAUUGGUACAUAAAACUGUACGCGACACAAGGCAUUGGGGAGGGAUCUCACAGACCUAGGACCAACAAAGCUAGUCUCUAGUGCUGUCACCCACCCCCUGCCCACCUUUG ((((((....)(((((......))))))))))....((((..((((.(((.....((((..(((((((...........))).))))..))))..))).)))).))))........ ( -40.00) >consensus GUCGCCUAUUGGUACAUAAAACUGUACGCGACACAAGGCAUUGGGGAGGGACCUCACAGACCUAGGACCAACAAAGCUAGUCCCCAGUGCUGUCA____CCCACCCCCUGCCCACCUUUG (((((......(((((......))))))))))....((((..((((.(((.....((((..(((((((...........))).))))..))))......))).)))).))))........ (-35.34 = -35.65 + 0.31)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
