Structure #152383

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	+
Position	141,211,374 - 141,211,489
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	86.81
Columns	120
Mean single MFE	-46.62
Consensus MFE	-32.58
Combinations/base pair	39 / 33 = 1.18
SCI	0.7
z-score	-3.49
RNA class probability	0.969546

This structure is part of cluster 84280

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  86.81
 Mean single sequence MFE: -46.62
 Consensus MFE: -32.58
 Energy contribution: -32.08
 Covariance contribution:  -0.50
 Mean z-score:  -3.49
 Structure conservation index:   0.70
 SVM decision value:   1.64
 SVM RNA-class probability: 0.969546
 Prediction: RNA

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>hg17.chr5/141211374-141211489
UCCCCAGUGCUGUCGCCAACCCCUGCCCACCUUUGGUUUCAUCUCUCCAGUGCCCAGUUGGUGACAGACUCAGUGCCCUGGCCCCAACCAGGGGGCUGGGGGCUCUGUCUUUGCC
.(((((((.(((((((((((...((..(((...(((..........))))))..))))))))))))))))((((.((((((......)))))).))))))))............. ( -48.80)
>canFam1.chr2/37412300-37412413
UCCCCAGUGCUGUCACCUAUCCCCUGCCCACCUUUGGUUUCUCCUCGAGUGCCCAGGUGGUGACAGACUCAGUGCCCUGACCCCAACCAGGGGGCUGGGACUCUGCCUUUGCC
....(((.(((((((((.....((((..(((....((.....))....)))..)))).)))))))).((((((.(((((........))))).)))))).).)))........ ( -43.90)
>mm5.chr18/38630261-38630380
UCCCUAGUGCUGUCUGUCACCCACCCCCUGCCCACCUUUGGUUUCACCUCUUGAGUGCCCAGGUGGUGACAGACUCAGUGCCCUUACCCCAACCAGGGGGUCAGGGCCCUGCCUUUGCC
........((.((((((((((.....((((..((((...((.....))....).)))..)))).)))))))))).(((.(((((.(((((......))))).))))).))).....)). ( -50.30)
>rn3.chr18/1054-1168
UCUCUAGUGCUGUCACCCACCCCCUGCCCACCUUUGGUUUCACCUCUUGAGUGCCCAGGUGGUGACAGACUCAGUACCCUUACCCCAACCAGGGGGUCAGGGCCCUGCCUUGCC
.....(((.((((((((.....((((..((((...((.....))....).)))..)))).)))))))))))(((..((((.(((((......))))).))))..)))....... ( -43.50)
>consensus
UCCCCAGUGCUGUCA____CCCACCCCCUGCCCACCUUUGGUUUCACCUCUUGAGUGCCCAGGUGGUGACAGACUCAGUGCCCUGACCCCAACCAGGGGG_UCAGGGCCCUGCCUUUGCC
.....(((.((((((.....(((((...((..(((....((.....))......)))..))))))))))))))))(((.(((((..((((.....))))....))))).)))........ (-32.58 = -32.08 +  -0.50)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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