Structure #152385
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr5 |
| Strand | - |
| Position | 141,211,374 - 141,211,489 |
| Number of sequences | 4 |
| Organisms | human, dog, mouse, rat |
| Mean pairwise identity | 86.81 |
| Columns | 120 |
| Mean single MFE | -49.1 |
| Consensus MFE | -35.85 |
| Combinations/base pair | 35 / 33 = 1.06 |
| SCI | 0.73 |
| z-score | -2.32 |
| RNA class probability | 0.905908 |
This structure is part of cluster 84280
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 86.81 Mean single sequence MFE: -49.10 Consensus MFE: -35.85 Energy contribution: -36.73 Covariance contribution: 0.88 Mean z-score: -2.32 Structure conservation index: 0.73 SVM decision value: 1.04 SVM RNA-class probability: 0.905908 Prediction: RNA ###################################################################### >hg17.chr5/141211489-141211374 GGCAAAGACAGAGCCCCCAGCCCCCUGGUUGGGGCCAGGGCACUGAGUCUGUCACCAACUGGGCACUGGAGAGAUGAAACCAAAGGUGGGCAGGGGUUGGCGACAGCACUGGGGA .............(((((((..(((((((....)))))))..)))((((((((.((((((..((.((....))......(((....)))))...)))))).))))).))))))). ( -46.20) >canFam1.chr2/37412413-37412300 GGCAAAGGCAGAGUCCCAGCCCCCUGGUUGGGGUCAGGGCACUGAGUCUGUCACCACCUGGGCACUCGAGGAGAAACCAAAGGUGGGCAGGGGAUAGGUGACAGCACUGGGGA .((....))...((((..(((((......)))))..)))).((.(((((((((((.((((..((((...((.....))...))))..)))).....)))))))).))).)).. ( -46.30) >mm5.chr18/38630380-38630261 GGCAAAGGCAGGGCCCUGACCCCCUGGUUGGGGUAAGGGCACUGAGUCUGUCACCACCUGGGCACUCAAGAGGUGAAACCAAAGGUGGGCAGGGGGUGGGUGACAGACAGCACUAGGGA .((.....(((.(((((.(((((......))))).))))).))).((((((((((.((((..((((.....((.....))...))))..)))).....)))))))))).))........ ( -55.20) >rn3.chr18/1168-1054 GGCAAGGCAGGGCCCUGACCCCCUGGUUGGGGUAAGGGUACUGAGUCUGUCACCACCUGGGCACUCAAGAGGUGAAACCAAAGGUGGGCAGGGGGUGGGUGACAGCACUAGAGA .......(((..((((.(((((......))))).))))..)))(((((((((((.((((..((((.....((.....))...))))..)))).....)))))))).)))..... ( -48.70) >consensus GGCAAAGGCAGAGCCCCGA_CCCCCUGGUUGGGGUAAGGGCACUGAGUCUGUCACCACCUGGGCACUCAAGAGGUGAAACCAAAGGUGGGCAGGGGGUGGG____UGACAGCACUAGGGA ........(((.(((((....((((.....))))..))))).)))((((((((.((((((((.((((.....))))...))..)))))).(....)..........))))).)))..... (-35.85 = -36.73 + 0.88)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
