Structure #152388

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	+
Position	141,211,409 - 141,211,517
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	82.94
Columns	120
Mean single MFE	-47.32
Consensus MFE	-29.42
Combinations/base pair	42 / 38 = 1.11
SCI	0.62
z-score	-1.98
RNA class probability	0.699733

This structure is part of cluster 84280

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  82.94
 Mean single sequence MFE: -47.32
 Consensus MFE: -29.42
 Energy contribution: -34.30
 Covariance contribution:   4.88
 Mean z-score:  -1.98
 Structure conservation index:   0.62
 SVM decision value:   0.35
 SVM RNA-class probability: 0.699733
 Prediction: RNA

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>hg17.chr5/141211409-141211517
GUUUCAUCUCUCCAGUGCCCAGUUGGUGACAGACUCAGUGCCCUGGCCCCAACCAGGGGGCUGGGGGCUCUGUCUUUGCCUGUGGGAAGGGCUUCUCAGCUCUCCCAG
............(((.((((..(((....)))..(((((.((((((......)))))).))))))))).)))..........(((((.(((((....)))))))))). ( -48.40)
>canFam1.chr2/37412336-37412451
GUUUCUCCUCGAGUGCCCAGGUGGUGACAGACUCAGUGCCCUGACCCCAACCAGGGGGCUGGGACUCUGCCUUUGCCUGUGGGAAGGGCUCCUCUGUGCUUCUCAGCCCUCCCAG
..........(((.((.((((..(.(.((((((((((.(((((........))))).))))))..)))).).)..))))(((((((.((......)).))))))))).))).... ( -48.70)
>mm5.chr18/38630301-38630420
GUUUCACCUCUUGAGUGCCCAGGUGGUGACAGACUCAGUGCCCUUACCCCAACCAGGGGGUCAGGGCCCUGCCUUUGCCUCUGGAAGGACUUCUGCUCUGUGCUUCUGAGCCCUCCCAG
...(((((.((((......)))).)))))((((..(((.(((((.(((((......))))).))))).)))..))))...((((.(((.(((..((.....))....))).))).)))) ( -48.60)
>rn3.chr18/1090-1208
GUUUCACCUCUUGAGUGCCCAGGUGGUGACAGACUCAGUACCCUUACCCCAACCAGGGGGUCAGGGCCCUGCCUUGCCUGUGGAAGGACUUCUGCUCUGUGCUUCUGAGCCCUCCCAG
((((((((.((((......)))).)))))..))).(((..((((.(((((......))))).))))..)))......(((.(((.((.(((..((.....))....))))).)))))) ( -43.60)
>consensus
GUUUCACCUCUUGAGUGCCCAGGUGGUGACAGACUCAGUGCCCUGACCCCAACCAGGGGG_UCAGGGCCCUGCCUUUGCCUGUGGAAAGA__UCUGCUCUGUGCUUCUCAGCCCUCCCAG
...(((((.((((......)))).)))))((((..(((.(((((..((((.....))))....))))).)))..))))....(((((((((((..((.....))....))))))))))). (-29.42 = -34.30 +   4.88)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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