Structure #152389
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr5 |
| Strand | - |
| Position | 141,211,409 - 141,211,517 |
| Number of sequences | 4 |
| Organisms | human, dog, mouse, rat |
| Mean pairwise identity | 82.94 |
| Columns | 120 |
| Mean single MFE | -47.91 |
| Consensus MFE | -35.3 |
| Combinations/base pair | 39 / 31 = 1.26 |
| SCI | 0.74 |
| z-score | -1.99 |
| RNA class probability | 0.873605 |
This structure is part of cluster 84280
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 82.94 Mean single sequence MFE: -47.91 Consensus MFE: -35.30 Energy contribution: -35.36 Covariance contribution: 0.06 Mean z-score: -1.99 Structure conservation index: 0.74 SVM decision value: 0.88 SVM RNA-class probability: 0.873605 Prediction: RNA ###################################################################### >hg17.chr5/141211517-141211409 CUGGGAGAGCUGAGAAGCCCUUCCCACAGGCAAAGACAGAGCCCCCAGCCCCCUGGUUGGGGCCAGGGCACUGAGUCUGUCACCAACUGGGCACUGGAGAGAUGAAAC .((((((.(((....)))..))))))(((((...((((((..((((((((....)))))))).(((....)))..)))))).((....)))).)))............ ( -43.60) >canFam1.chr2/37412451-37412336 CUGGGAGGGCUGAGAAGCACAGAGGAGCCCUUCCCACAGGCAAAGGCAGAGUCCCAGCCCCCUGGUUGGGGUCAGGGCACUGAGUCUGUCACCACCUGGGCACUCGAGGAGAAAC .((((((((((..............))))).)))))((((....((((((.((((((((....))))))))((((....)))).))))))....))))....(((...))).... ( -45.34) >mm5.chr18/38630420-38630301 CUGGGAGGGCUCAGAAGCACAGAGCAGAAGUCCUUCCAGAGGCAAAGGCAGGGCCCUGACCCCCUGGUUGGGGUAAGGGCACUGAGUCUGUCACCACCUGGGCACUCAAGAGGUGAAAC (((((((((((.....((.....))...)))))))))))((((.....(((.(((((.(((((......))))).))))).))).)))).(((((.(.(((....))).).)))))... ( -51.80) >rn3.chr18/1208-1090 CUGGGAGGGCUCAGAAGCACAGAGCAGAAGUCCUUCCACAGGCAAGGCAGGGCCCUGACCCCCUGGUUGGGGUAAGGGUACUGAGUCUGUCACCACCUGGGCACUCAAGAGGUGAAAC .((((((((((.....((.....))...))))))))))(((((....(((..((((.(((((......))))).))))..))).)))))(((((.(.(((....))).).)))))... ( -50.90) >consensus CUGGGAGGGCUCAGAAGCACAGAGCAGA__CCCUCCCACAGGCAAAGGCAGAGCCCCGA_CCCCCUGGUUGGGGUAAGGGCACUGAGUCUGUCACCACCUGGGCACUCAAGAGGUGAAAC .(((((((((...................)))))))))(((((...(((((((((((....((((.....))))..)))))......)))))).((....)))).)))............ (-35.30 = -35.36 + 0.06)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
