Structure #152391
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr5 |
| Strand | + |
| Position | 141,211,449 - 141,211,557 |
| Number of sequences | 4 |
| Organisms | human, dog, mouse, rat |
| Mean pairwise identity | 84.34 |
| Columns | 120 |
| Mean single MFE | -41.6 |
| Consensus MFE | -27.99 |
| Combinations/base pair | 32 / 27 = 1.19 |
| SCI | 0.67 |
| z-score | -2.48 |
| RNA class probability | 0.931717 |
This structure is part of cluster 84280
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 84.34 Mean single sequence MFE: -41.60 Consensus MFE: -27.99 Energy contribution: -27.68 Covariance contribution: -0.31 Mean z-score: -2.48 Structure conservation index: 0.67 SVM decision value: 1.22 SVM RNA-class probability: 0.931717 Prediction: RNA ###################################################################### >hg17.chr5/141211449-141211557 CCCUGGCCCCAACCAGGGGGCUGGGGGCUCUGUCUUUGCCUGUGGGAAGGGCUUCUCAGCUCUCCCAGCCAUCUGGGCCACCCUCUUUCUUCUGGCUUCUCCAUUGUG (((..(((((......)))))..)))((..((.....(((..(((((.(((((....))))))))))(((.....)))...............))).....))..)). ( -44.20) >canFam1.chr2/37412374-37412491 CCCUGACCCCAACCAGGGGGCUGGGACUCUGCCUUUGCCUGUGGGAAGGGCUCCUCUGUGCUUCUCAGCCCUCCCAGCCAUCUGGGCUACCCCCUUCCUUCUGGCUUCUCCAUUGUG (((...((((.....))))...)))((..((.....(((...((((((((.........(((....)))...(((((....))))).....))))))))...))).....))..)). ( -41.40) >mm5.chr18/38630341-38630460 CCCUUACCCCAACCAGGGGGUCAGGGCCCUGCCUUUGCCUCUGGAAGGACUUCUGCUCUGUGCUUCUGAGCCCUCCCAGCCAUCUAGGCUACCCCCUUCCUUCUGGCUUCUCCAUUGUG ((((.(((((......))))).))))..........(((...((((((......((((.........))))......((((.....))))....))))))....)))............ ( -40.40) >rn3.chr18/1130-1248 CCCUUACCCCAACCAGGGGGUCAGGGCCCUGCCUUGCCUGUGGAAGGACUUCUGCUCUGUGCUUCUGAGCCCUCCCAGCCAUCUAGGCUACCCCCUUCCUUCUGGCUUCUCCAUUGUG ((((.(((((......))))).)))).........(((...((((((......((((.........))))......((((.....))))....))))))....)))............ ( -40.40) >consensus CCCUGACCCCAACCAGGGGG_UCAGGGCCCUGCCUUUGCCUGUGGAAAGA__UCUGCUCUGUGCUUCUCAGCCCUCCCAGCCAUCUAGGCUACCCCCUUCCUUCUGGCUUCUCCAUUGUG .(((..((((.....))))....)))((..((.....(((...((((((.............(((....)))......((((.....))))....))))))....))).....))..)). (-27.99 = -27.68 + -0.31)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
