Structure #152395

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	+
Position	141,211,489 - 141,211,597
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	86.35
Columns	120
Mean single MFE	-33.16
Consensus MFE	-24.11
Combinations/base pair	35 / 30 = 1.17
SCI	0.73
z-score	-1.82
RNA class probability	0.750569

This structure is part of cluster 84280

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  86.35
 Mean single sequence MFE: -33.16
 Consensus MFE: -24.11
 Energy contribution: -24.55
 Covariance contribution:   0.44
 Mean z-score:  -1.82
 Structure conservation index:   0.73
 SVM decision value:   0.47
 SVM RNA-class probability: 0.750568
 Prediction: RNA

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>hg17.chr5/141211489-141211597
UGUGGGAAGGGCUUCUCAGCUCUCCCAGCCAUCUGGGCCACCCUCUUUCUUCUGGCUUCUCCAUUGUGCAAAAUGCUCCUCUGCUCUUCUGCUCAGUGCUCAGGGGUC
..(((((.(((((....))))))))))(((.(((((((((............)))))....(((((.(((....((......)).....))).)))))..))))))). ( -34.20)
>canFam1.chr2/37412413-37412531
UGUGGGAAGGGCUCCUCUGUGCUUCUCAGCCCUCCCAGCCAUCUGGGCUACCCCCUUCCUUCUGGCUUCUCCAUUGUGCAAAAUGCUCCUCUGCCCUUCCACUCAGUGCUCAGGAGUC
(((((((.(((((..............)))))))))(((((...(((.....))).......)))))..........)))....((((((..((.((.......)).))..)))))). ( -33.24)
>mm5.chr18/38630380-38630500
UCUGGAAGGACUUCUGCUCUGUGCUUCUGAGCCCUCCCAGCCAUCUAGGCUACCCCCUUCCUUCUGGCUUCUCCAUUGUGCAAAAUGUUCCUCUGCCCUCCUGCUCAGUGCUCAGGAGUC
...((((((......((((.........))))......((((.....))))....))))))....(((((((.(((((.(((....((......)).....))).)))))...))))))) ( -33.40)
>rn3.chr18/1168-1288
UGUGGAAGGACUUCUGCUCUGUGCUUCUGAGCCCUCCCAGCCAUCUAGGCUACCCCCUUCCUUCUGGCUUCUCCAUUGUGCAAAAUGUUCCUCUGCCCUCCCGCUCAGUGCUCAGGAGUC
...((((((......((((.........))))......((((.....))))....))))))....(((((((.(((((.((.....((......))......)).)))))...))))))) ( -31.80)
>consensus
UGUGGAAAGA__UCUGCUCUGUGCUUCUCAGCCCUCCCAGCCAUCUAGGCUACCCCCUUCCUUCUGGCUUCUCCAUUGUGCAAAAUGCUCCUCUGCCCUCCCGCUCAGUGCUCAGGAGUC
...((((((.............(((....)))......((((.....))))....))))))....(((((((.(((((.(((....((......)).....))).)))))...))))))) (-24.11 = -24.55 +   0.44)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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