Structure #152412

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	+
Position	141,211,597 - 141,211,716
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	84.8
Columns	120
Mean single MFE	-46.12
Consensus MFE	-37.64
Combinations/base pair	51 / 37 = 1.38
SCI	0.82
z-score	-2.7
RNA class probability	0.988845

This structure is part of cluster 84280

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  84.80
 Mean single sequence MFE: -46.12
 Consensus MFE: -37.64
 Energy contribution: -35.70
 Covariance contribution:  -1.94
 Mean z-score:  -2.70
 Structure conservation index:   0.82
 SVM decision value:   2.14
 SVM RNA-class probability: 0.988845
 Prediction: RNA

######################################################################

>hg17.chr5/141211597-141211716
UCUAAGACCAGGGCAAGGUACCCAGGCCACUAGGGGCUUCCAGUGGGAGUCCACUGACCCCAGGAAUGCCGCCUGUCUGGACCACCUUCUCCACCAAGCAAAUGGGCCUCAUACAAUCU
..........(((((((((..((((((....((((((((((..((((.(((....))))))))))).))).)))))))))...))))).....(((......))))))).......... ( -41.90)
>canFam1.chr2/37412531-37412649
UCCAAGACCAGGGCAGGGUACCCAGGCCACCAGGGGCUUCCAGGGGAGUCCAGUGACUCCAGGAAUGCCUCCUGUCUGGACCACCCUCUCCACCAAGCAAAUGGGCCUCAUACAAUCU
..........(((((((((..((((((....((((((((((...((((((....)))))).)))).))).)))))))))...))))).....(((......))))))).......... ( -45.60)
>mm5.chr18/38630500-38630619
CCCAAGGCCAGGUCAGGGUACCCAAGCCACCAAGAGCUCCCAGAGGGAGUCUACUGACCCCAGGGAUGCCUUUUGGCUGGAUUACCCUCUCCAUUGAGCAGAUGGGCCUCAUACAAUCU
....(((((..(((((((((.(((.((((..(((.((((((...(((.(((....)))))).)))).))))).)))))))..))))))(((....)))..))).))))).......... ( -47.20)
>rn3.chr18/1288-1408
UCCAAGGCCAGGUCAGGGUACCCAAGCUACCAGGGGCUUCCAGUGGGAGUCCUACUGACCCCAGGGACGCCUCUUGGCUGGAUUCCCCUCCCCACUGAGCAGACGGGCCUCAUACAAUCU
....(((((..(((.(((...(((.((((..((((((.(((..((((.(((.....))))))).))).)))))))))))))...)))(((......)))..))).))))).......... ( -49.80)
>consensus
UCCAAGACCAGGGCAGGGUACCCAAGCCACCAGGGGCUUCCAGUGGGAGUCC_ACUGACCCCAGGAAUGCCUCCUGGCUGGACCACCCUCUCCACCAAGCAAAUGGGCCUCAUACAAUCU
....(((((.((..(((((.....(((((((((((((((((...(((.(((.....)))))).)))).))).))))).))).)))))))..))..((......))))))).......... (-37.64 = -35.70 +  -1.94)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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