Structure #152418

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	+
Position	141,211,637 - 141,211,755
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	82.91
Columns	120
Mean single MFE	-37.46
Consensus MFE	-22.73
Combinations/base pair	41 / 33 = 1.24
SCI	0.61
z-score	-2.19
RNA class probability	0.772701

This structure is part of cluster 84280

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  82.91
 Mean single sequence MFE: -37.46
 Consensus MFE: -22.73
 Energy contribution: -23.85
 Covariance contribution:   1.12
 Mean z-score:  -2.19
 Structure conservation index:   0.61
 SVM decision value:   0.53
 SVM RNA-class probability: 0.772701
 Prediction: RNA

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>hg17.chr5/141211637-141211755
CAGUGGGAGUCCACUGACCCCAGGAAUGCCGCCUGUCUGGACCACCUUCUCCACCAAGCAAAUGGGCCUCAUACAAUCUUCUUGCCCGAAUCCUGACCUCCAGGACCCAGGACAAUCC
((((((....))))))......(((.((((((.((..((((........)))).)).))...(((((................)))))..(((((.....)))))....)).)).))) ( -32.59)
>canFam1.chr2/37412571-37412687
CAGGGGAGUCCAGUGACUCCAGGAAUGCCUCCUGUCUGGACCACCCUCUCCACCAAGCAAAUGGGCCUCAUACAAUCUUCUUGCCAGAAUCCUGACCUCCAGGACCCAGACAGCCC
.((((..((((((......(((((.....))))).))))))..)))).........((...((((............((((....))))(((((.....)))))))))....)).. ( -35.50)
>mm5.chr18/38630540-38630658
CAGAGGGAGUCUACUGACCCCAGGGAUGCCUUUUGGCUGGAUUACCCUCUCCAUUGAGCAGAUGGGCCUCAUACAAUCUAUUUGUCCAGAUCCUAGCCUUCAGGACCCAGGACAGCCC
....(((.(((....)))))).(((...(((...(((((((((...(((......)))((((((((..........))))))))....))))).))))...))).))).......... ( -36.30)
>rn3.chr18/1328-1448
CAGUGGGAGUCCUACUGACCCCAGGGACGCCUCUUGGCUGGAUUCCCCUCCCCACUGAGCAGACGGGCCUCAUACAAUCUUUUUGUCCUGAUCCUAACCUUUAGGACCCAGGACAGCCCC
(((((((.((((..(((....)))))))(((....)))............))))))).......((((...............(((((((.(((((.....)))))..))))))))))). ( -45.46)
>consensus
CAGUGGGAGUCC_ACUGACCCCAGGAAUGCCUCCUGGCUGGACCACCCUCUCCACCAAGCAAAUGGGCCUCAUACAAUCUUCUUGCCCGAAUCCUAACCUCCAGGACCCAGGACAG_CCC
....(((.(((.....)))))).(((..(((((((((.((((........))))))))).....))))..............((((((...(((((.....)))))....)))))).))) (-22.73 = -23.85 +   1.12)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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