Structure #152421

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	-
Position	141,211,637 - 141,211,755
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	82.91
Columns	120
Mean single MFE	-46.3
Consensus MFE	-35.31
Combinations/base pair	48 / 36 = 1.33
SCI	0.76
z-score	-1.78
RNA class probability	0.778658

This structure is part of cluster 84280

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  82.91
 Mean single sequence MFE: -46.30
 Consensus MFE: -35.31
 Energy contribution: -35.00
 Covariance contribution:  -0.31
 Mean z-score:  -1.78
 Structure conservation index:   0.76
 SVM decision value:   0.55
 SVM RNA-class probability: 0.778658
 Prediction: RNA

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>hg17.chr5/141211755-141211637
GGAUUGUCCUGGGUCCUGGAGGUCAGGAUUCGGGCAAGAAGAUUGUAUGAGGCCCAUUUGCUUGGUGGAGAAGGUGGUCCAGACAGGCGGCAUUCCUGGGGUCAGUGGACUCCCACUG
...(((.(((((((((((.....)))))))))))))).............(((((....(((((.((((........))))..)))))((....))..)))))(((((....))))). ( -45.00)
>canFam1.chr2/37412687-37412571
GGGCUGUCUGGGUCCUGGAGGUCAGGAUUCUGGCAAGAAGAUUGUAUGAGGCCCAUUUGCUUGGUGGAGAGGGUGGUCCAGACAGGAGGCAUUCCUGGAGUCACUGGACUCCCCUG
(((((....((((((((.....))))))))..((((.....))))....))))).((..(...)..)).((((..((((((.((((((...))))))......))))))..)))). ( -45.20)
>mm5.chr18/38630658-38630540
GGGCUGUCCUGGGUCCUGAAGGCUAGGAUCUGGACAAAUAGAUUGUAUGAGGCCCAUCUGCUCAAUGGAGAGGGUAAUCCAGCCAAAAGGCAUCCCUGGGGUCAGUAGACUCCCUCUG
(((((((((.((((((((.....))))))))))))..(((.....)))..)))))...........((((((((.......(((....)))..))))((((((....)))))))))). ( -42.80)
>rn3.chr18/1448-1328
GGGGCUGUCCUGGGUCCUAAAGGUUAGGAUCAGGACAAAAAGAUUGUAUGAGGCCCGUCUGCUCAGUGGGGAGGGGAAUCCAGCCAAGAGGCGUCCCUGGGGUCAGUAGGACUCCCACUG
(((((((((((((.(((((.....)))))))))))))............((..(((.(((.(.....).))).)))..))..(((....))))))))(((((((.....))).))))... ( -52.20)
>consensus
GGG_CUGUCCUGGGUCCUGAAGGUCAGGAUCCGGACAAAAAGAUUGUAUGAGGCCCAUCUGCUCAGUGGAGAGGGUAAUCCAGACAAGAGGCAUCCCUGGGGUCAGU_GGACUCCCACUG
(((..(((((.((((((((.....)))))))))))))..............((.((((((.(((....))).)))))).)).(((....)))..))).((((((.....))))))..... (-35.31 = -35.00 +  -0.31)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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