Structure #152423

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	+
Position	141,211,676 - 141,211,794
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	82.35
Columns	120
Mean single MFE	-29.74
Consensus MFE	-26.03
Combinations/base pair	32 / 27 = 1.19
SCI	0.88
z-score	-1.94
RNA class probability	0.930015

This structure is part of cluster 84280

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  82.35
 Mean single sequence MFE: -29.74
 Consensus MFE: -26.03
 Energy contribution: -27.29
 Covariance contribution:   1.25
 Mean z-score:  -1.94
 Structure conservation index:   0.88
 SVM decision value:   1.20
 SVM RNA-class probability: 0.930015
 Prediction: RNA

######################################################################

>hg17.chr5/141211676-141211794
GACCACCUUCUCCACCAAGCAAAUGGGCCUCAUACAAUCUUCUUGCCCGAAUCCUGACCUCCAGGACCCAGGACAAUCCUUGAGGCCACUGUUCCACCAGCUGGGCACCCAAUACUAC
..............(((.((.....(((((((........(((((......(((((.....)))))..))))).......)))))))..((......))))))).............. ( -26.46)
>canFam1.chr2/37412609-37412726
GACCACCCUCUCCACCAAGCAAAUGGGCCUCAUACAAUCUUCUUGCCAGAAUCCUGACCUCCAGGACCCAGACAGCCCUUGAGGCCACUGCCCCACCAGCUGGGCACCUCAUGUUAC
.................((((....(((((((.......((((....))))(((((.....))))).............)))))))..(((((........))))).....)))).. ( -29.30)
>mm5.chr18/38630579-38630697
GAUUACCCUCUCCAUUGAGCAGAUGGGCCUCAUACAAUCUAUUUGUCCAGAUCCUAGCCUUCAGGACCCAGGACAGCCCUCCAGGCCACUGCCCCACUAGCCGGGCACCUCAUGCUAC
.................((((((.((((((..............((((.((.........)).))))...(((......))))))))..(((((........)))))).)).)))).. ( -28.70)
>rn3.chr18/1368-1488
GAUUCCCCUCCCCACUGAGCAGACGGGCCUCAUACAAUCUUUUUGUCCUGAUCCUAACCUUUAGGACCCAGGACAGCCCCCCCAGGCCACUGCCCCACUAGCCGGGCACCUCAAUGCUAC
.................((((....(((((............((((((((.(((((.....)))))..)))))))).......)))))..(((((........)))))......)))).. ( -34.51)
>consensus
GACCACCCUCUCCACCAAGCAAAUGGGCCUCAUACAAUCUUCUUGCCCGAAUCCUAACCUCCAGGACCCAGGACAG_CCCUCCAGGCCACUGCCCCACCAGCCGGGCACC_CAAUGCUAC
.................((((....(((((((..........((((((...(((((.....)))))....)))))).....)))))))..(((((........)))))......)))).. (-26.03 = -27.29 +   1.25)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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