Structure #152430
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr5 |
| Strand | + |
| Position | 141,211,755 - 141,211,873 |
| Number of sequences | 4 |
| Organisms | human, dog, mouse, rat |
| Mean pairwise identity | 85.01 |
| Columns | 120 |
| Mean single MFE | -38.28 |
| Consensus MFE | -30 |
| Combinations/base pair | 34 / 29 = 1.17 |
| SCI | 0.78 |
| z-score | -2.1 |
| RNA class probability | 0.912967 |
This structure is part of cluster 84280
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 85.01 Mean single sequence MFE: -38.28 Consensus MFE: -30.00 Energy contribution: -31.12 Covariance contribution: 1.12 Mean z-score: -2.10 Structure conservation index: 0.78 SVM decision value: 1.09 SVM RNA-class probability: 0.912967 Prediction: RNA ###################################################################### >hg17.chr5/141211755-141211873 UUGAGGCCACUGUUCCACCAGCUGGGCACCCAAUACUACCAACUCCAAGACUAUUGCACCUGCCCCAUUUGUGCAGGGGAAAGGGGCUGUCUCUUUAACAAGCCCCAAGCCCAUCUCC ..((((...(((......))).(((((...........((.....(((.....)))..((((((......).)))))))...((((((((.......)).))))))..))))))))). ( -33.70) >canFam1.chr2/37412687-37412805 UUGAGGCCACUGCCCCACCAGCUGGGCACCUCAUGUUACCAACUCUACCACUAUUGCACCUGCCCUGUUUGUGCAGGGGGAAGGGGGCUGUUUCUUUAUCAAGCCCCUGGCCCACUUC .(((((....(((((........)))))))))).........................(((((.(.....).)))))(((..(((((((............)))))))..)))..... ( -42.80) >mm5.chr18/38630658-38630776 UCCAGGCCACUGCCCCACUAGCCGGGCACCUCAUGCUACCAGCUCUGCCACUAUUGCACCUGCCCCUUAUGUGCAGGGGAAAGGGGCUGUGUCUUUAACAAGCCCCUGGCCCACUUUC ....((((....((((..(((...((((......((.....))..)))).))).(((((.((.....)).)))))))))..(((((((((.......)).)))))))))))....... ( -41.40) >rn3.chr18/1448-1567 CCCAGGCCACUGCCCCACUAGCCGGGCACCUCAAUGCUACCAGCUCUGCCACUAUUGCACCUGCCCCAUUUGUGCAGGGGAAAGGGAUUGUGUCUUUAACAAGCCCCUGGCCCACUUUC ....((((....((((...(((.(((((......)))..)).)))..........(((((...........)))))))))..((((.((((.......))))..))))))))....... ( -35.20) >consensus UCCAGGCCACUGCCCCACCAGCCGGGCACC_CAAUGCUACCAACUCUACCACUAUUGCACCUGCCCCAUUUGUGCA_GGGGAAAGGGGCUGUGUCUUUAACAAGCCCCUGGCCCACUUUC ....((((....((((...(((((((((......)))..))))))..........(((((...........))))).))))..(((((((............)))))))))))....... (-30.00 = -31.12 + 1.12)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
