Structure #152431

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	+
Position	141,211,794 - 141,211,913
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	88.56
Columns	120
Mean single MFE	-45.65
Consensus MFE	-37.61
Combinations/base pair	33 / 31 = 1.06
SCI	0.82
z-score	-2.84
RNA class probability	0.985111

This structure is part of cluster 84280

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  88.56
 Mean single sequence MFE: -45.65
 Consensus MFE: -37.61
 Energy contribution: -38.55
 Covariance contribution:   0.94
 Mean z-score:  -2.84
 Structure conservation index:   0.82
 SVM decision value:   2.00
 SVM RNA-class probability: 0.985111
 Prediction: RNA

######################################################################

>hg17.chr5/141211794-141211913
CAACUCCAAGACUAUUGCACCUGCCCCAUUUGUGCAGGGGAAAGGGGCUGUCUCUUUAACAAGCCCCAAGCCCAUCUCCUGGGCCUCCCCAAGGGAAAGGAGCCUUUGGCCAACCCCUA
...............(((((...........)))))(((((..((((((((.......)).))))))..(((((.....))))).))))).((((....(.(((...))))...)))). ( -42.50)
>canFam1.chr2/37412726-37412845
CAACUCUACCACUAUUGCACCUGCCCUGUUUGUGCAGGGGGAAGGGGGCUGUUUCUUUAUCAAGCCCCUGGCCCACUUCUGGGCCUCCCCCAGGGAAAGGAGCCUUUGGCCAACCCCCA
...............(((((..((...))..)))))((((((.(((((((............)))))))((((((....)))))))))))).(((....(.(((...))))....))). ( -50.90)
>mm5.chr18/38630697-38630816
CAGCUCUGCCACUAUUGCACCUGCCCCUUAUGUGCAGGGGAAAGGGGCUGUGUCUUUAACAAGCCCCUGGCCCACUUUCUGAGCCUCCCCCAGGGAUGGGAGCCUUUGGCCAACCCCUA
...(((((.......(((((.((.....)).)))))(((((.(((((((((.......)).)))))))(((.((.....)).)))))))))))))..(((.(((...)))...)))... ( -43.10)
>rn3.chr18/1488-1607
CAGCUCUGCCACUAUUGCACCUGCCCCAUUUGUGCAGGGGAAAGGGAUUGUGUCUUUAACAAGCCCCUGGCCCACUUUCUGGGCCUCCCCCAGGGAUGGGAGCCUUUGGCCAACCCCUA
.......((((.....((....))(((((((.((..(((((.((((.((((.......))))..))))((((((.....))))))))))))).)))))))......))))......... ( -46.10)
>consensus
CAACUCUACCACUAUUGCACCUGCCCCAUUUGUGCA_GGGGAAAGGGGCUGUGUCUUUAACAAGCCCCUGGCCCACUUUCUGGGCCUCCCCCAGGGAAAGGAGCCUUUGGCCAACCCCUA
...............(((((...........))))).(((((.(((((((............)))))))((((((.....))))))))))).((((....(.(((...))))...)))). (-37.61 = -38.55 +   0.94)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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