Structure #152434

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	-
Position	141,211,794 - 141,211,913
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	88.56
Columns	120
Mean single MFE	-50.06
Consensus MFE	-44.17
Combinations/base pair	45 / 37 = 1.22
SCI	0.88
z-score	-2.22
RNA class probability	0.970057

This structure is part of cluster 84280

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  88.56
 Mean single sequence MFE: -50.05
 Consensus MFE: -44.17
 Energy contribution: -44.80
 Covariance contribution:   0.63
 Mean z-score:  -2.22
 Structure conservation index:   0.88
 SVM decision value:   1.65
 SVM RNA-class probability: 0.970057
 Prediction: RNA

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>hg17.chr5/141211913-141211794
UAGGGGUUGGCCAAAGGCUCCUUUCCCUUGGGGAGGCCCAGGAGAUGGGCUUGGGGCUUGUUAAAGAGACAGCCCCUUUCCCCUGCACAAAUGGGGCAGGUGCAAUAGUCUUGGAGUUG
.(((((((.......)))))))((((...(((((((((((.....)))))).((((((.(((.....)))))))))..)))))(((((...((...)).)))))........))))... ( -47.20)
>canFam1.chr2/37412845-37412726
UGGGGGUUGGCCAAAGGCUCCUUUCCCUGGGGGAGGCCCAGAAGUGGGCCAGGGGCUUGAUAAAGAAACAGCCCCCUUCCCCCUGCACAAACAGGGCAGGUGCAAUAGUGGUAGAGUUG
...((.((.((((...((.(((..((((((((((((((((....)))))).((((((............))))))..)))))).........)))).))).)).....)))).)).)). ( -49.90)
>mm5.chr18/38630816-38630697
UAGGGGUUGGCCAAAGGCUCCCAUCCCUGGGGGAGGCUCAGAAAGUGGGCCAGGGGCUUGUUAAAGACACAGCCCCUUUCCCCUGCACAUAAGGGGCAGGUGCAAUAGUGGCAGAGCUG
....((((.((((...((.((..(((((((((((((((((.....))))))(((((((((((...)))).))))))).)))))).......)))))..)).)).....))))..)))). ( -54.21)
>rn3.chr18/1607-1488
UAGGGGUUGGCCAAAGGCUCCCAUCCCUGGGGGAGGCCCAGAAAGUGGGCCAGGGGCUUGUUAAAGACACAAUCCCUUUCCCCUGCACAAAUGGGGCAGGUGCAAUAGUGGCAGAGCUG
....((((.((((...((.((..(((((((((((((((((.....))))))(((((.((((.......)))).)))))))))))).......))))..)).)).....))))..)))). ( -48.91)
>consensus
UAGGGGUUGGCCAAAGGCUCCCAUCCCUGGGGGAGGCCCAGAAAGUGGGCCAGGGGCUUGUUAAAGACACAGCCCCUUUCCCC_UGCACAAAUGGGGCAGGUGCAAUAGUGGCAGAGCUG
...((.((.((((...((.((...((((((((((((((((.....)))))).((((((.(((.....)))))))))..))))).........)))))..)).)).....)))).)).)). (-44.17 = -44.80 +   0.63)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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