Structure #152436

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	+
Position	141,211,833 - 141,211,952
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	86.03
Columns	120
Mean single MFE	-38.54
Consensus MFE	-30.49
Combinations/base pair	33 / 27 = 1.22
SCI	0.79
z-score	-1.74
RNA class probability	0.763558

This structure is part of cluster 84280

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  86.03
 Mean single sequence MFE: -38.54
 Consensus MFE: -30.49
 Energy contribution: -31.30
 Covariance contribution:   0.81
 Mean z-score:  -1.74
 Structure conservation index:   0.79
 SVM decision value:   0.51
 SVM RNA-class probability: 0.763558
 Prediction: RNA

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>hg17.chr5/141211833-141211952
GAAAGGGGCUGUCUCUUUAACAAGCCCCAAGCCCAUCUCCUGGGCCUCCCCAAGGGAAAGGAGCCUUUGGCCAACCCCUAGACCUGGCUGCUGCCACCCCAUCCCAUUCUACCCCUUCC
(((.((((((((.......)).))))))..(((((.....)))))........((((..((.(((...))).............((((....)))).))..)))).))).......... ( -36.40)
>canFam1.chr2/37412766-37412884
GAAGGGGGCUGUUUCUUUAUCAAGCCCCUGGCCCACUUCUGGGCCUCCCCCAGGGAAAGGAGCCUUUGGCCAACCCCCAGACCUGGUUGCUGCUACCUCAGCCCACUCUACCCUCUGC
...(((((((............)))))))((((((....)))))).......(((..((((((....(((.((((.........)))))))))).)))...))).............. ( -40.50)
>mm5.chr18/38630736-38630854
GAAAGGGGCUGUGUCUUUAACAAGCCCCUGGCCCACUUUCUGAGCCUCCCCCAGGGAUGGGAGCCUUUGGCCAACCCCUAGACCUGGCUGUUGUCACCUUAGCCACCCUACCCACUGC
...(((((((((.......)).)))))))(((.((.....)).))).......(((..(((.(((...))).............((((((.........)))))))))..)))..... ( -37.70)
>rn3.chr18/1527-1646
GAAAGGGAUUGUGUCUUUAACAAGCCCCUGGCCCACUUUCUGGGCCUCCCCCAGGGAUGGGAGCCUUUGGCCAACCCCUAGACCUGGCUGUUGUCACCUUAGCCACCCUACCCCACUGC
...((((.....((((.......(((...(((((..(..(((((.....)))))..)..)).)))...)))........)))).((((((.........)))))))))).......... ( -39.56)
>consensus
GAAAGGGGCUGUGUCUUUAACAAGCCCCUGGCCCACUUUCUGGGCCUCCCCCAGGGAAAGGAGCCUUUGGCCAACCCCUAGACCUGGCUGCUGCCACCUCAG_CCACCCUACCCC_CUGC
...(((((((............)))))))((((((.....)))))).......(((((((.((((...((.(........).)).)))).))))).))...................... (-30.49 = -31.30 +   0.81) 

	

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Consensus structure

Secondary structure graph

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Montain plot

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Dotplot

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