Structure #152438

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	-
Position	141,211,833 - 141,211,952
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	86.03
Columns	120
Mean single MFE	-51.1
Consensus MFE	-41.25
Combinations/base pair	39 / 33 = 1.18
SCI	0.81
z-score	-2.49
RNA class probability	0.973134

This structure is part of cluster 84280

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  86.03
 Mean single sequence MFE: -51.10
 Consensus MFE: -41.25
 Energy contribution: -40.69
 Covariance contribution:  -0.56
 Mean z-score:  -2.49
 Structure conservation index:   0.81
 SVM decision value:   1.71
 SVM RNA-class probability: 0.973134
 Prediction: RNA

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>hg17.chr5/141211952-141211833
GGAAGGGGUAGAAUGGGAUGGGGUGGCAGCAGCCAGGUCUAGGGGUUGGCCAAAGGCUCCUUUCCCUUGGGGAGGCCCAGGAGAUGGGCUUGGGGCUUGUUAAAGAGACAGCCCCUUUC
(((((((((.(...((((.((((((((....))).((((........))))....)))))..))))((((.(((.((((((.......)))))).))).)))).....).))))))))) ( -53.10)
>canFam1.chr2/37412884-37412766
GCAGAGGGUAGAGUGGGCUGAGGUAGCAGCAACCAGGUCUGGGGGUUGGCCAAAGGCUCCUUUCCCUGGGGGAGGCCCAGAAGUGGGCCAGGGGCUUGAUAAAGAAACAGCCCCCUUC
...(((((......((((((.(((..((((..(((....)))..)))))))..((((((((((((....))))((((((....))))))))))))))..........))))))))))) ( -54.30)
>mm5.chr18/38630854-38630736
GCAGUGGGUAGGGUGGCUAAGGUGACAACAGCCAGGUCUAGGGGUUGGCCAAAGGCUCCCAUCCCUGGGGGAGGCUCAGAAAGUGGGCCAGGGGCUUGUUAAAGACACAGCCCCUUUC
.(((.((((.((((((((..(....)...)))))(((((..((.....))..))))))))))))))).....((((((.....))))))(((((((((((...)))).)))))))... ( -49.60)
>rn3.chr18/1646-1527
GCAGUGGGGUAGGGUGGCUAAGGUGACAACAGCCAGGUCUAGGGGUUGGCCAAAGGCUCCCAUCCCUGGGGGAGGCCCAGAAAGUGGGCCAGGGGCUUGUUAAAGACACAAUCCCUUUC
.....(((((...(((.((..(....)(((((((...(((((((((.((((...))))...)))))))))...((((((.....))))))...))).))))..)).))).))))).... ( -47.40)
>consensus
GCAG_GGGGUAGAGUGG_CUAAGGUGACAACAGCCAGGUCUAGGGGUUGGCCAAAGGCUCCCAUCCCUGGGGGAGGCCCAGAAAGUGGGCCAGGGGCUUGUUAAAGACACAGCCCCUUUC
...............(((((..(((.......))).)))))((((((((.....(((((((..((((...))))((((((.....)))))).)))))))..........))))))))... (-41.25 = -40.69 +  -0.56)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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