Structure #152442

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	+
Position	141,211,873 - 141,211,992
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	84.5
Columns	120
Mean single MFE	-40.8
Consensus MFE	-27.35
Combinations/base pair	36 / 29 = 1.24
SCI	0.67
z-score	-1.76
RNA class probability	0.664462

This structure is part of cluster 84280

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  84.50
 Mean single sequence MFE: -40.80
 Consensus MFE: -27.35
 Energy contribution: -27.48
 Covariance contribution:   0.12
 Mean z-score:  -1.76
 Structure conservation index:   0.67
 SVM decision value:   0.27
 SVM RNA-class probability: 0.664462
 Prediction: RNA

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>hg17.chr5/141211873-141211992
UGGGCCUCCCCAAGGGAAAGGAGCCUUUGGCCAACCCCUAGACCUGGCUGCUGCCACCCCAUCCCAUUCUACCCCUUCCCCUCUGUAGAAGGGCUUCGUAUGCCAGGGCUACCAGCCUA
(((((.((((...))))..((((((((.(((.............((((....))))......(((.((((((............)))))))))........))))))))).)).))))) ( -39.60)
>canFam1.chr2/37412805-37412924
UGGGCCUCCCCCAGGGAAAGGAGCCUUUGGCCAACCCCCAGACCUGGUUGCUGCUACCUCAGCCCACUCUACCCUCUGCCCUCAAUAGAAGGGCUGUGUAUGCUGAGGCUACCAGCCUA
..((((.(((...)))((((....)))))))).....(((....)))..((((.(((((((((..((.(..(((((((.......))).))))..).))..))))))).)).))))... ( -41.20)
>mm5.chr18/38630776-38630894
UGAGCCUCCCCCAGGGAUGGGAGCCUUUGGCCAACCCCUAGACCUGGCUGUUGUCACCUUAGCCACCCUACCCACUGCCCUCCAUAGAAGGGCUGUAGAAGUCAGGGCCACCACCCUA
............((((.(((..(((((.(((.............((((((.........))))))..((((.....(((((.......))))).))))..))))))))..))))))). ( -38.60)
>rn3.chr18/1567-1686
UGGGCCUCCCCCAGGGAUGGGAGCCUUUGGCCAACCCCUAGACCUGGCUGUUGUCACCUUAGCCACCCUACCCCACUGCCCUCCAUAGAAGGGCUGUAGAUGCCAGGGCCACCACCCUA
.(((.....)))((((.(((..(((((.(((.............((((((.........))))))..((((......(((((.......))))).))))..))))))))..))))))). ( -43.80)
>consensus
UGGGCCUCCCCCAGGGAAAGGAGCCUUUGGCCAACCCCUAGACCUGGCUGCUGCCACCUCAG_CCACCCUACCCC_CUGCCCUCCAUAGAAGGGCUGUAGAUGCCAGGGCCACCACCCUA
(((((.((((...))))..((((((((.(((.............((((....))))......................(((((.......))))).......))))))))).)).))))) (-27.35 = -27.48 +   0.12)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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