Structure #152446

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	-
Position	141,211,873 - 141,211,992
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	84.5
Columns	120
Mean single MFE	-52.32
Consensus MFE	-36.54
Combinations/base pair	40 / 33 = 1.21
SCI	0.7
z-score	-2.07
RNA class probability	0.850779

This structure is part of cluster 84280

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  84.50
 Mean single sequence MFE: -52.33
 Consensus MFE: -36.54
 Energy contribution: -36.10
 Covariance contribution:  -0.44
 Mean z-score:  -2.07
 Structure conservation index:   0.70
 SVM decision value:   0.79
 SVM RNA-class probability: 0.850779
 Prediction: RNA

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>hg17.chr5/141211992-141211873
UAGGCUGGUAGCCCUGGCAUACGAAGCCCUUCUACAGAGGGGAAGGGGUAGAAUGGGAUGGGGUGGCAGCAGCCAGGUCUAGGGGUUGGCCAAAGGCUCCUUUCCCUUGGGGAGGCCCA
..((((.(((((....)).)))..))))(((((...(((((((((((((..............((((....))))((((........))))....))))))))))))).)))))..... ( -49.40)
>canFam1.chr2/37412924-37412805
UAGGCUGGUAGCCUCAGCAUACACAGCCCUUCUAUUGAGGGCAGAGGGUAGAGUGGGCUGAGGUAGCAGCAACCAGGUCUGGGGGUUGGCCAAAGGCUCCUUUCCCUGGGGGAGGCCCA
...((((.((.(((((((.(((.(.((((((((......))..)))))).).))).))))))))).))))..(((((...(((((((.......)))))))...)))))(((...))). ( -52.60)
>mm5.chr18/38630894-38630776
UAGGGUGGUGGCCCUGACUUCUACAGCCCUUCUAUGGAGGGCAGUGGGUAGGGUGGCUAAGGUGACAACAGCCAGGUCUAGGGGUUGGCCAAAGGCUCCCAUCCCUGGGGGAGGCUCA
.....((((.((((((...(((((.((((((.....)))))).))))))))))).)))).(....)...((((...(((((((((.((((...))))...)))))))))...)))).. ( -52.60)
>rn3.chr18/1686-1567
UAGGGUGGUGGCCCUGGCAUCUACAGCCCUUCUAUGGAGGGCAGUGGGGUAGGGUGGCUAAGGUGACAACAGCCAGGUCUAGGGGUUGGCCAAAGGCUCCCAUCCCUGGGGGAGGCCCA
..(((((((.((((((.(.(((((.((((((.....)))))).)))))))))))).)))..(((.......)))...(((((((((.((((...))))...)))))))))....)))). ( -54.70)
>consensus
UAGGCUGGUAGCCCUGGCAUACACAGCCCUUCUAUGGAGGGCAG_GGGGUAGAGUGG_CUAAGGUGACAACAGCCAGGUCUAGGGGUUGGCCAAAGGCUCCCAUCCCUGGGGGAGGCCCA
..((.((((((((((..........((((((.....))))))............((((((..(((.......))).)))))))))))).))))..(.(((((........))))).))). (-36.54 = -36.10 +  -0.44)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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