Structure #152448
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr5 |
| Strand | + |
| Position | 141,211,913 - 141,212,032 |
| Number of sequences | 4 |
| Organisms | human, dog, mouse, rat |
| Mean pairwise identity | 79.19 |
| Columns | 120 |
| Mean single MFE | -34.8 |
| Consensus MFE | -22.12 |
| Combinations/base pair | 30 / 24 = 1.25 |
| SCI | 0.64 |
| z-score | -3.18 |
| RNA class probability | 0.998783 |
This structure is part of cluster 84280
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 79.19 Mean single sequence MFE: -34.80 Consensus MFE: -22.12 Energy contribution: -23.00 Covariance contribution: 0.88 Mean z-score: -3.18 Structure conservation index: 0.64 SVM decision value: 3.22 SVM RNA-class probability: 0.998783 Prediction: RNA ###################################################################### >hg17.chr5/141211913-141212032 GACCUGGCUGCUGCCACCCCAUCCCAUUCUACCCCUUCCCCUCUGUAGAAGGGCUUCGUAUGCCAGGGCUACCAGCCUAACAAUGCUCUCCUUCCUAGCACUGUCACCCCAAGCCAAGU .((.(((((((((....(((......((((((............)))))).(((.......))).)))....))))...(((.((((.........)))).))).......))))).)) ( -29.60) >canFam1.chr2/37412845-37412964 GACCUGGUUGCUGCUACCUCAGCCCACUCUACCCUCUGCCCUCAAUAGAAGGGCUGUGUAUGCUGAGGCUACCAGCCUAACAAUGCUCUCCUUCCCAGCACUGUUACCCCAAGCCAAGG ..(((((((((((.(((((((((..((.(..(((((((.......))).))))..).))..))))))).)).)))).(((((.((((.........)))).))))).....)))).))) ( -39.80) >mm5.chr18/38630816-38630934 GACCUGGCUGUUGUCACCUUAGCCACCCUACCCACUGCCCUCCAUAGAAGGGCUGUAGAAGUCAGGGCCACCACCCUAACAGUGCACCCCUUCCCAGCACUGUUACCCCAAACACAAA (((.((((((.........))))))..((((.....(((((.......))))).))))..)))((((......))))((((((((...........)))))))).............. ( -34.70) >rn3.chr18/1607-1721 GACCUGGCUGUUGUCACCUUAGCCACCCUACCCCACUGCCCUCCAUAGAAGGGCUGUAGAUGCCAGGGCCACCACCCUAACAGUGCAUUCCAGCACUGUUACCCCAAACACAAG ..((((((.((((......))))....((((......(((((.......))))).))))..))))))..........(((((((((......)))))))))............. ( -35.10) >consensus GACCUGGCUGCUGCCACCUCAG_CCACCCUACCCC_CUGCCCUCCAUAGAAGGGCUGUAGAUGCCAGGGCCACCACCCUAACAAUGCACUCCUUCCCAGCACUGUUACCCCAAACAAAAG ..((((((.((((......))))...............(((((.......))))).......))))))..........(((((((((...........)))))))))............. (-22.12 = -23.00 + 0.88)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
