Structure #152462

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	-
Position	141,212,032 - 141,212,145
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	86.47
Columns	120
Mean single MFE	-34.1
Consensus MFE	-25.57
Combinations/base pair	29 / 24 = 1.21
SCI	0.75
z-score	-1.58
RNA class probability	0.638448

This structure is part of cluster 84280

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  86.47
 Mean single sequence MFE: -34.10
 Consensus MFE: -25.57
 Energy contribution: -25.57
 Covariance contribution:   0.00
 Mean z-score:  -1.58
 Structure conservation index:   0.75
 SVM decision value:   0.21
 SVM RNA-class probability: 0.638448
 Prediction: RNA

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>hg17.chr5/141212145-141212032
CUUUGGGAGCUGUGCUGCUGGGGUCUUGACUCUUGUACCCCAGAGACCCCACCCCCACCCCGGAAAAGCCAGGGGCCUGAAGAAUCACCCUAUUUAUCUGCCCCUUACCCCCA
.(((((((((......)))((((((((.((....))......))))))))........))))))......((((((..((.((((......)))).)).))))))........ ( -36.60)
>canFam1.chr2/37413076-37412964
CUUUGGGAGCUGUGCUGCUGGGGUCUUGACUCCUGUAACCCCAGAGACCCCACUGCACCUCGGGAAAGCUAGGGGCCUGAAGAAUCACCCUAUUCUCUGCUCCUUGCCCCUA
......(((..((((.(.(((((((((.((....)).......)))))))))).)))))))(((...((.((((((..((.((((......)))))).)))))).))))).. ( -41.20)
>mm5.chr18/38631048-38630934
CUUUGGGAGCUGUGCUGCUGGAGUCUUGACUCCUGUAACCCCAGAGACCCCACUCCCACCCCCAGAAAAGCCAGGGGCUGUAGAAUCACCCUGUUCUCUGCCUCCUUACCCCUA
((((((((((......)))(((((....)))))......)))))))..........................((((((.(.(((((......)))))).))).)))........ ( -31.20)
>rn3.chr18/1839-1721
CUUUGGGAGCUGUGCUGCUGGAGUCUUGACUCCUGUAACCCCAGAGACCCUACUCCCAUCCCCAGAAAAGCCAGGGACUGUAGAAUCACCCUAUUAUCUGCCUCCUCCUUUCCCCCCA
....((((((((.(((((.(((((....))))).)).......(((......))).............))))))(((..(((((............))))).)))....))))).... ( -27.40)
>consensus
CUUUGGGAGCUGUGCUGCUGGAGUCUUGACUCCUGUAACCCCAGAGACCCCACUCCCACCCC_AGAAAAGCCAGGGGC_UGAAGAAUCACCCUAUUC_UCUGCC_____CCUUACCCCCA
((((((((((......)))(((((....)))))......)))))))................((((.....(((((.............)))))....)))).................. (-25.57 = -25.57 +   0.00)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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