Structure #153996

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	+
Position	159,206,973 - 159,207,093
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	80.33
Columns	120
Mean single MFE	-39.83
Consensus MFE	-29.44
Combinations/base pair	39 / 29 = 1.34
SCI	0.74
z-score	-1.94
RNA class probability	0.891888

This structure is part of cluster 85234

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  80.33
 Mean single sequence MFE: -39.83
 Consensus MFE: -29.44
 Energy contribution: -30.00
 Covariance contribution:   0.56
 Mean z-score:  -1.94
 Structure conservation index:   0.74
 SVM decision value:   0.97
 SVM RNA-class probability: 0.891888
 Prediction: RNA

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>hg17.chr5/159206973-159207093
ACUUAUUUUCUUAGCUGAUCGGUAGCAGCAGCCCAGCUGGCUCAUACCUCAAAGGCAGGAAUUCCUCCUCUAGCUCAUCAGCACUAAUUUGUGCCAAGGAGCCAGGGAGGGGACAGACUC
.......(((((.(((....((((..((((((...))).)))..)))).....))))))))(((((((.((.((((....((((......))))....)))).)))))))))........ ( -40.70)
>mm5.chr11/78079805-78079688
AGUUAUUUUCUUAGCCGAUCUGCAACAGCCCUGCUGGCUCCUACCUCAAAGGCAAAGAUUCCUCCUCUAGUUUGUUGGCACUGGUUUGUGCCAAGGAUCCAGAGAGAGGACAGGCUC
((((....((((.(((..........((((.....))))...........))).)))).(((((((((.(.((.(((((((......))))))).)).).)))).)))))..)))). ( -39.20)
>rn3.chr10/81689690-81689573
AGUUAUUUUCUUAGCUGAUCUGCAACAGCCCAGCUGGCUCAUACCUCAAAGGCAAAGAUUCCUCCUCUAGUUUGUUGGCACUGAUUUGUGCCAAGGAUCCAGAGAAAGGACAGGCUC
...........((((((..(((...)))..))))))(((....((.....)).......((((.((((.(.((.(((((((......))))))).)).).))))..))))..))).. ( -32.70)
>canFam1.chr4/37365404-37365285
ACUUCUUUCCUUAGCUGAUCUGUGGCAGCCACUCAGUUGGCUCAUGCCUCCAGGGCAGAAAUUCCUUCCCUAGUUCAUUGGCACUGGUGUCUGCCAAGGGGCUGGGAAGGGGCAUGCUC
..((((.((((.((((((...((((...))))))))))(((....)))...)))).)))).(((((((((.(((((.((((((........)))))).))))))))))))))....... ( -46.70)
>consensus
ACUUAUUUUCUUAGCUGAUCU___GCAACAGCCCAGCUGGCUCAUACCUCAAAGGCAAAAAUUCCUCCUCUAGUUCAUUGGCACUGAUUUGUGCCAAGGAGCCAGAGAAAGGACAGGCUC
............((((..............(((.....((......)).....)))......(((((((((.((((.(((((((......))))))).)))).)))).)))))..)))). (-29.44 = -30.00 +   0.56)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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