Structure #154000

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	-
Position	159,206,973 - 159,207,093
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	80.33
Columns	120
Mean single MFE	-42.45
Consensus MFE	-32
Combinations/base pair	48 / 35 = 1.37
SCI	0.75
z-score	-2.5
RNA class probability	0.990783

This structure is part of cluster 85234

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  80.33
 Mean single sequence MFE: -42.45
 Consensus MFE: -32.00
 Energy contribution: -32.00
 Covariance contribution:   0.00
 Mean z-score:  -2.50
 Structure conservation index:   0.75
 SVM decision value:   2.23
 SVM RNA-class probability: 0.990783
 Prediction: RNA

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>hg17.chr5/159207093-159206973
GAGUCUGUCCCCUCCCUGGCUCCUUGGCACAAAUUAGUGCUGAUGAGCUAGAGGAGGAAUUCCUGCCUUUGAGGUAUGAGCCAGCUGGGCUGCUGCUACCGAUCAGCUAAGAAAAUAAGU
...(((((((((((((((((((.(..((((......))))..).))))))).)))))..(((.((((.....)))).)))......)))).((((........))))..)))........ ( -45.70)
>mm5.chr11/78079688-78079805
GAGCCUGUCCUCUCUCUGGAUCCUUGGCACAAACCAGUGCCAACAAACUAGAGGAGGAAUCUUUGCCUUUGAGGUAGGAGCCAGCAGGGCUGUUGCAGAUCGGCUAAGAAAAUAACU
.......(((((.((((((....(((((((......)))))))....))))))))))).((((.(((...((.((((.((((.....)))).))))...))))).))))........ ( -45.70)
>rn3.chr10/81689573-81689690
GAGCCUGUCCUUUCUCUGGAUCCUUGGCACAAAUCAGUGCCAACAAACUAGAGGAGGAAUCUUUGCCUUUGAGGUAUGAGCCAGCUGGGCUGUUGCAGAUCAGCUAAGAAAAUAACU
(.((...(((((.((((((....(((((((......)))))))....))))))))))).((..((((.....)))).)))))(((((..(((...)))..)))))............ ( -38.60)
>canFam1.chr4/37365285-37365404
GAGCAUGCCCCUUCCCAGCCCCUUGGCAGACACCAGUGCCAAUGAACUAGGGAAGGAAUUUCUGCCCUGGAGGCAUGAGCCAACUGAGUGGCUGCCACAGAUCAGCUAAGGAAAGAAGU
.........(((((((((..(.((((((........)))))).)..)).))))))).((((((..(((...(((....))).......((((((........)))))))))..)))))) ( -39.80)
>consensus
GAGCCUGUCCCCUCCCUGGAUCCUUGGCACAAACCAGUGCCAACAAACUAGAGGAGGAAUCUCUGCCUUUGAGGUAUGAGCCAGCUGGGCUGCUGC___AGAUCAGCUAAGAAAAUAACU
.(((((...((((((((((.((.(((((((......))))))).)).))))))))))...(((((((.....)))).)))......)))))((((........))))............. (-32.00 = -32.00 +   0.00)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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