Structure #154004

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	+
Position	159,207,013 - 159,207,120
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	81.62
Columns	107
Mean single MFE	-43.82
Consensus MFE	-36.86
Combinations/base pair	42 / 31 = 1.35
SCI	0.84
z-score	-3.36
RNA class probability	0.999223

This structure is part of cluster 85234

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 107
 Columns: 107
 Strand: +
 Mean pairwise identity:  81.62
 Mean single sequence MFE: -43.83
 Consensus MFE: -36.86
 Energy contribution: -37.30
 Covariance contribution:   0.44
 Mean z-score:  -3.36
 Structure conservation index:   0.84
 SVM decision value:   3.44
 SVM RNA-class probability: 0.999223
 Prediction: RNA

######################################################################

>hg17.chr5/159207013-159207120
CUCAUACCUCAAAGGCAGGAAUUCCUCCUCUAGCUCAUCAGCACUAAUUUGUGCCAAGGAGCCAGGGAGGGGACAGACUCUGACCUCCCACAGGCCCCUGCCUGGCA
............(((((((..(((((((.((.((((....((((......))))....)))).)))))))))......((((........))))..))))))).... ( -40.10)
>mm5.chr11/78079832-78079725
CUCCUACCUCAAAGGCAAAGAUUCCUCCUCUAGUUUGUUGGCACUGGUUUGUGCCAAGGAUCCAGAGAGAGGACAGGCUCUGGCCUCCCAUGGGCCUCUGCCAGGCA
......(((....((((.....(((((((((.(.((.(((((((......))))))).)).).)))).))))).(((((((((....))).)))))).))))))).. ( -44.60)
>rn3.chr10/81689717-81689610
CUCAUACCUCAAAGGCAAAGAUUCCUCCUCUAGUUUGUUGGCACUGAUUUGUGCCAAGGAUCCAGAGAAAGGACAGGCUCUGGCCUCCCAUGGGCCUCUGCCAGGCA
......(((....((((.....((((.((((.(.((.(((((((......))))))).)).).))))..)))).(((((((((....))).)))))).))))))).. ( -39.60)
>canFam1.chr4/37365431-37365325
CUCAUGCCUCCAGGGCAGAAAUUCCUUCCCUAGUUCAUUGGCACUGGUGUCUGCCAAGGGGCUGGGAAGGGGCAUGCUCUGGCUUCCCUCAGGCCCCUGCCUGGCA
....((((.((((((((....(((((((((.(((((.((((((........)))))).))))))))))))))..))))))))........((((....)))))))) ( -51.00)
>consensus
CUCAUACCUCAAAGGCAAAAAUUCCUCCUCUAGUUCAUUGGCACUGAUUUGUGCCAAGGAGCCAGAGAAAGGACAGGCUCUGGCCUCCCACAGGCCCCUGCCAGGCA
.............((((((...(((((((((.((((.(((((((......))))))).)))).)))).)))))........(((((.....)))))))))))..... (-36.86 = -37.30 +   0.44)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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