Structure #154005
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr5 |
| Strand | - |
| Position | 159,207,013 - 159,207,120 |
| Number of sequences | 4 |
| Organisms | human, mouse, rat, dog |
| Mean pairwise identity | 81.62 |
| Columns | 107 |
| Mean single MFE | -47.73 |
| Consensus MFE | -41.06 |
| Combinations/base pair | 52 / 38 = 1.37 |
| SCI | 0.86 |
| z-score | -3.52 |
| RNA class probability | 0.999408 |
This structure is part of cluster 85234
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 107 Columns: 107 Strand: + Mean pairwise identity: 81.62 Mean single sequence MFE: -47.73 Consensus MFE: -41.06 Energy contribution: -40.88 Covariance contribution: -0.19 Mean z-score: -3.52 Structure conservation index: 0.86 SVM decision value: 3.58 SVM RNA-class probability: 0.999408 Prediction: RNA ###################################################################### >hg17.chr5/159207120-159207013 UGCCAGGCAGGGGCCUGUGGGAGGUCAGAGUCUGUCCCCUCCCUGGCUCCUUGGCACAAAUUAGUGCUGAUGAGCUAGAGGAGGAAUUCCUGCCUUUGAGGUAUGAG ((((((((((((((((.....)))))...........((((((((((((.(..((((......))))..).))))))).)))))....)))))))....)))).... ( -53.40) >mm5.chr11/78079725-78079832 UGCCUGGCAGAGGCCCAUGGGAGGCCAGAGCCUGUCCUCUCUCUGGAUCCUUGGCACAAACCAGUGCCAACAAACUAGAGGAGGAAUCUUUGCCUUUGAGGUAGGAG (((((((((((((((....))((((....)))).(((((.((((((....(((((((......)))))))....))))))))))).))))))))....))))).... ( -48.40) >rn3.chr10/81689610-81689717 UGCCUGGCAGAGGCCCAUGGGAGGCCAGAGCCUGUCCUUUCUCUGGAUCCUUGGCACAAAUCAGUGCCAACAAACUAGAGGAGGAAUCUUUGCCUUUGAGGUAUGAG (((((((((((((.....((.((((....)))).))((((((((((....(((((((......)))))))....))))))))))..))))))))....))))).... ( -45.50) >canFam1.chr4/37365325-37365431 UGCCAGGCAGGGGCCUGAGGGAAGCCAGAGCAUGCCCCUUCCCAGCCCCUUGGCAGACACCAGUGCCAAUGAACUAGGGAAGGAAUUUCUGCCCUGGAGGCAUGAG ((((.(((((((((....((((((.((.....))...)))))).)))))((((......))))))))......((((((.(((....))).)))))).)))).... ( -43.60) >consensus UGCCAGGCAGAGGCCCAUGGGAGGCCAGAGCCUGUCCCCUCCCUGGAUCCUUGGCACAAACCAGUGCCAACAAACUAGAGGAGGAAUCUCUGCCUUUGAGGUAUGAG (((((((((((((.....((.((((....)))).))((((((((((.((.(((((((......))))))).)).))))))))))..))))))))....))))).... (-41.06 = -40.88 + -0.19)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
