Structure #154263
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr5 |
| Strand | - |
| Position | 163,580,280 - 163,580,400 |
| Number of sequences | 6 |
| Organisms | human, dog, mouse, rat, chicken, zebrafish |
| Mean pairwise identity | 75.11 |
| Columns | 120 |
| Mean single MFE | -33.07 |
| Consensus MFE | -19 |
| Combinations/base pair | 40 / 28 = 1.43 |
| SCI | 0.57 |
| z-score | -1.98 |
| RNA class probability | 0.939786 |
This structure is part of cluster 85396
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 6 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 75.11 Mean single sequence MFE: -33.07 Consensus MFE: -19.00 Energy contribution: -18.82 Covariance contribution: -0.19 Mean z-score: -1.98 Structure conservation index: 0.57 SVM decision value: 1.28 SVM RNA-class probability: 0.939786 Prediction: RNA ###################################################################### >hg17.chr5/163580400-163580280 CUAAUUAAGCCAUAAUGAUUGAGGUACAAGGCAUUUCCUGGGGAUUAAUGGCCAGCUGAAAAGAGUUGAUGGCCCAUGGCAUAGCUGAGAGACAUUAACCCCAACCAGCCAUUAAUCCUG .........(((.((((.(((.....)))..))))...)))(((((((((((...((....)).((((((((((...))).....(....).)))))))........))))))))))).. ( -30.60) >canFam1.chr4/41066012-41066132 CUAAUUAAACCAUAAUGAUUGAGGUACAAGGCAUUUCCUGGGGAUUAAUGGCCAACUGAAAAGAGUUGAUGGCCCAUGGCAUAGCUGAGAGCCAUUAACCCUAACCAGCCAUUAAUCCUG .........(((.((((.(((.....)))..))))...)))(((((((((((...((....)).(((((((((.(.((((...)))).).)))))))))........))))))))))).. ( -38.00) >mm5.chr11/82139384-82139504 CUAAUUAAGCCAUAAUGAUUGAAGUACAAGACAUUUCCUGGGGAUUGAUGGCCAAGUGAGAAGAGUUGAUGGCCCAUGGCAUAGCUGAGAGCCAUUAACCCCAACUAACCAUUAAUCCUU .........(((.((((.(((.....)))..))))...)))((((((((((...(((.....(.(((((((((.(.((((...)))).).))))))))))...)))..)))))))))).. ( -33.30) >rn3.chr10/85779843-85779963 CUAAUUAAGCCAUAAUGAUUGAAGUACAAGACAUUUCCUGGGGAUUGAUGGCCAAGUGAGAAGAGUUGAUGGCCCAUGGCAUAGCUGAGGACCAUUAACCCCAACUAACCAUUAAUCCAC .........(((.((((.(((.....)))..))))...)))((((((((((...(((.....(.((((((((.((.((((...)))).)).)))))))))...)))..)))))))))).. ( -33.60) >galGal2.chr13/3120154-3120041 CUAAGCACUGAUGACUCAGGCAGAGGCUUCCUGGGGAUUAAUGACCACUUGGGAGAAGUUGAUGUCCCAAAAUAUAGCCUAGGGCCAUUUACUUCAUUUGUUCAUUAAUCUUU ..............((((((.((...)).))))))(((((((((((....))..(((((.((((.(((.............))).)))).)))))......)))))))))... ( -31.72) >danRer1.chrNA/107870523-107870643 UUAAUUAAACAAUAAUGAUGGCAAUGUAUGACAUUUUCUGGGAAUUAAUGAGCAGCUGGGAAAAGCUGAUGGCUGGAGAGUCAGCCAAAGGCUAUUAGCUUCGGUCUACCAUUAAUCUCC ...................((.((((.....)))).)).((..(((((((..(((((......)))))..((((((((....((((...)))).....))))))))...)))))))..)) ( -31.20) >consensus CUAAUUAAGCCAUAAUGAUUGAAGUACAAGACAUUUCCUGGGGAUUAAUGGCCAACUGAGAAGAGUUGAUGGCCCAUGGCAUAGCUGAGAGCCAUUAACCCCAACCAACCAUUAAUCCUC ........................................(((((((((((.....((....(.(((((((((.(.((((...)))).).))))))))).))).....))))))))))). (-19.00 = -18.82 + -0.19)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
