Structure #154570

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	-
Position	166,225,112 - 166,225,173
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	83.2
Columns	64
Mean single MFE	-12.67
Consensus MFE	-12.07
Combinations/base pair	17 / 12 = 1.42
SCI	0.95
z-score	-3.13
RNA class probability	0.998899

This structure is part of cluster 85594

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 64
 Columns: 64
 Strand: +
 Mean pairwise identity:  83.20
 Mean single sequence MFE: -12.67
 Consensus MFE: -12.07
 Energy contribution: -11.45
 Covariance contribution:  -0.62
 Mean z-score:  -3.13
 Structure conservation index:   0.95
 SVM decision value:   3.27
 SVM RNA-class probability: 0.998899
 Prediction: RNA

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>hg17.chr5/166225173-166225112
AUGAAUGGCUUCAUGUCAUUCCCAAUUAAGCCUUCCCAUGAUCUGUCCUGAUUAGCAUAAA
..(((((((.....))))))).................(((((......)))))....... ( -10.70)
>mm5.chr11/84612670-84612731
AUGAAUGACUUCAUGUCAUUCCCAAUUAGGCACCCCCAUCAUCUGUCCUGAUUAGCACAAA
..(((((((.....)))))))..(((((((((...........)).)))))))........ ( -13.80)
>rn3.chr10/88432472-88432536
AUGGAUGGCUUCAUGCCAUCCCCAAUUAGCCCCACCCCCCAUCAUCUGUCCUGAUUAGCACAAA
..(((((((.....)))))))..((((((..(...............)..))))))........ ( -13.56)
>canFam1.chr4/43401036-43401097
AUGAAUGACUUCUAGUCAUUCCCAAUUAAUCCUUCCCAUCAUCUGUCCUGGUGAACACAAA
..(((((((.....))))))).................(((((......)))))....... ( -12.60)
>consensus
AUGAAUGACUUCAUGUCAUUCCCAAUUAAGCCC___CCCCAUCAUCUGUCCUGAUUAGCACAAA
..(((((((.....)))))))....................(((((......)))))....... (-12.07 = -11.45 +  -0.62) 

	

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Consensus structure

Secondary structure graph

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Montain plot

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Dotplot

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