Structure #155583
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr5 |
| Strand | + |
| Position | 170,629,409 - 170,629,529 |
| Number of sequences | 5 |
| Organisms | human, dog, mouse, rat, chicken |
| Mean pairwise identity | 95 |
| Columns | 120 |
| Mean single MFE | -29.68 |
| Consensus MFE | -25.04 |
| Combinations/base pair | 37 / 37 = 1.00 |
| SCI | 0.84 |
| z-score | -1.37 |
| RNA class probability | 0.625629 |
This structure is part of cluster 86084
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 95.00 Mean single sequence MFE: -29.68 Consensus MFE: -25.04 Energy contribution: -26.04 Covariance contribution: 1.00 Mean z-score: -1.37 Structure conservation index: 0.84 SVM decision value: 0.19 SVM RNA-class probability: 0.625629 Prediction: RNA ###################################################################### >hg17.chr5/170629409-170629529 UGUGUCGGUUAAGUAAUGCCUAACCCUAUUAAAAGGAAUGGAUUACAAAUUGCUUAACAGUGCUGAAAAACUAGACCCUAAUGACUAAUUGUGCUUGGAGUUUAGAGAGGGUUUGUCAGC .......((((((((((.((....(((......)))...)).......))))))))))...(((((.....((((((((...((((............)))).....))))))))))))) ( -28.00) >canFam1.chr4/47311419-47311299 UGUUUCGGUUAAGUAAUGCCUAACCCUAUUAAAAGAAAUGGGUUACAAAUUGCUUAACAGUGCUGAAAAACUAGACCCUAAUGACUAGUUGUGCUUGGAGUUUAGAGAGGAUUUGUCAGC .......((((((((((...((((((.(((......)))))))))...))))))))))...(((((.(((((((((.((((..((.....))..)))).))))))......))).))))) ( -31.30) >mm5.chr11/88513269-88513150 UGUGUCAUUAAGUAAUGCCUAACCCUAUUAAAAGGAAUGGGUUACAAAUUGCUUAACAGUGCUGAAAAACUAGACCCUAAUGACUAAUUGUGCCUGGAGUUUAGAGAGGGUUUGUCAGC .......(((((((((...((((((.(((......)))))))))...)))))))))....(((((.....((((((((...((((............)))).....))))))))))))) ( -30.60) >rn3.chr10/92593474-92593355 UGUGUCAUUAAGUAAUGCCUAACCCUAUUAAAAGGAAUGGGUUACAAAUUGCUUAACAGUGCUGAAAAACUAGACCCUAAUGACUAAUUGUGCCUGGAGUUUAGAGAGGCCUUGUCAGC .......(((((((((...((((((.(((......)))))))))...)))))))))....(((((....((((((((.....((.....))....)).))))))((....))..))))) ( -26.70) >galGal2.chr13/6218799-6218918 UGUGUCGGUUAAGUAAUGCAUAACCCUAUUAAAAGCAAUGGGUUACAAAUUGCUUAACAGUGCUGAAAAACUAGACCCUAAUGACUAAUUGUGCGUUGAGUUUAGAGAGGUUUGUCAGC .......((((((((((...((((((.............))))))...))))))))))...(((((.....((((((((...(((((((.....))).))))...)).))))))))))) ( -31.82) >consensus UGUGUCGGUUAAGUAAUGCCUAACCCUAUUAAAAGGAAUGGGUUACAAAUUGCUUAACAGUGCUGAAAAACUAGACCCUAAUGACUAAUUGUGCCUGGAGUUUAGAGAGGGUUUGUCAGC .......((((((((((...((((((.(((......)))))))))...))))))))))...(((((.(((((((((((.....((.....))....)).))))))......))).))))) (-25.04 = -26.04 + 1.00)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
