Structure #156255
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr5 |
| Strand | + |
| Position | 178,978,231 - 178,978,340 |
| Number of sequences | 5 |
| Organisms | human, dog, mouse, rat, chicken |
| Mean pairwise identity | 71.58 |
| Columns | 120 |
| Mean single MFE | -26.65 |
| Consensus MFE | -11.96 |
| Combinations/base pair | 21 / 15 = 1.40 |
| SCI | 0.45 |
| z-score | -3.14 |
| RNA class probability | 0.999816 |
This structure is part of cluster 86486
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 71.58 Mean single sequence MFE: -26.65 Consensus MFE: -11.96 Energy contribution: -11.28 Covariance contribution: -0.68 Mean z-score: -3.14 Structure conservation index: 0.45 SVM decision value: 4.15 SVM RNA-class probability: 0.999816 Prediction: RNA ###################################################################### >hg17.chr5/178978231-178978340 UUCAACAUUUCAAGUCUUAAAUCCAUUGGCAGCAUGUAUAGCAAGUGGGCUAAAAAGCCAGCCUCCACCAACAGUCCAGCCCACACUACACAUUUCCUUUCGCCAAUAA ........................((((((.((.......))..(((((((..........................))))))).................)))))).. ( -20.67) >canFam1.chr11/9911554-9911663 UUCAACAUUUCAGGUCUUAAAUCCAUUGGCAGCAUGUAUAGCAAGUGGGCUAAAAAGCCAGCCUCCACCAACAGUCUAGCCCACACUACACAUUUCAUUUCGCCAGUAA ............((........))((((((.((.......))..((((((((........................)))))))).................)))))).. ( -23.36) >mm5.chr11/71626979-71626878 UUCAUUAUUUCAAUUCCUUUGGCAGUAUGUGUAGCAAGUGGGCUAAAAAGCCAGCCUCCACCAACAGUCUAGCCCACACUACACACUUCUUUUCGCCAGUA ..................(((((((..(((((((...((((((((........................)))))))).)))))))...))....))))).. ( -25.46) >rn3.chr10/74806873-74806773 UUCAUAUUUCAACUUCUUUGGCAGUAUGUGUAGCAAGUGGGCUAAAAAGCCAGCCUCCACCAACAGUCUAGCCCACACUACACACUUCCUUUCGCCAAUA .................(((((((..(((((((...((((((((........................)))))))).)))))))....))...))))).. ( -24.76) >galGal2.chr13/4763989-4763880 UCAGCACUGUUUGCUCAUGUGGCAAUACAAGCAGAGGGUUAAAAACCUGAUCUCCACCAGGAUUUUAACCCAUCAGGAUGCUACAAGAAGCUCUGCAUGUGCUAAUGA ..(((((((((((((.....))))).))).((((((((((((((.((((........)))).)))))))))........(((......))))))))..)))))..... ( -39.00) >consensus UUCAACA_UUUCAACUCCU_______UUGGCAGUAUGUGUAGCAAGUGGGCUAAAAAGCCAGCCUCCACCAACAGUCUAGCCC______ACACUACACA____UUUCCUUUCGCCAAUAA ..........................(((((..............(..((((........))))..).......((.(((............))).))..............)))))... (-11.96 = -11.28 + -0.68)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
