Structure #156257

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	-
Position	178,978,231 - 178,978,340
Number of sequences	5
Organisms	human, dog, mouse, rat, chicken
Mean pairwise identity	71.58
Columns	120
Mean single MFE	-40.12
Consensus MFE	-27.4
Combinations/base pair	41 / 28 = 1.46
SCI	0.68
z-score	-4.58
RNA class probability	0.999621

This structure is part of cluster 86486

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 5
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  71.58
 Mean single sequence MFE: -40.12
 Consensus MFE: -27.40
 Energy contribution: -26.16
 Covariance contribution:  -1.24
 Mean z-score:  -4.58
 Structure conservation index:   0.68
 SVM decision value:   3.80
 SVM RNA-class probability: 0.999621
 Prediction: RNA

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>hg17.chr5/178978340-178978231
UUAUUGGCGAAAGGAAAUGUGUAGUGUGGGCUGGACUGUUGGUGGAGGCUGGCUUUUUAGCCCACUUGCUAUACAUGCUGCCAAUGGAUUUAAGACUUGAAAUGUUGAA
(((((((((.......(((((((((((((((((((..((..((....))..))..))))))))))..)))))))))..)))))))))......(((.......)))... ( -40.80)
>canFam1.chr11/9911663-9911554
UUACUGGCGAAAUGAAAUGUGUAGUGUGGGCUAGACUGUUGGUGGAGGCUGGCUUUUUAGCCCACUUGCUAUACAUGCUGCCAAUGGAUUUAAGACCUGAAAUGUUGAA
....(((((.......(((((((((((((((((((..((..((....))..))..))))))))))..)))))))))..))))).......................... ( -37.70)
>mm5.chr11/71626878-71626979
UACUGGCGAAAAGAAGUGUGUAGUGUGGGCUAGACUGUUGGUGGAGGCUGGCUUUUUAGCCCACUUGCUACACAUACUGCCAAAGGAAUUGAAAUAAUGAA
...(((((.......(((((((((((((((((((..((..((....))..))..))))))))))..)))))))))..)))))................... ( -38.80)
>rn3.chr10/74806773-74806873
UAUUGGCGAAAGGAAGUGUGUAGUGUGGGCUAGACUGUUGGUGGAGGCUGGCUUUUUAGCCCACUUGCUACACAUACUGCCAAAGAAGUUGAAAUAUGAA
..(((((...((...(((((((((((((((((((..((..((....))..))..))))))))))..))))))))).)))))))................. ( -40.90)
>galGal2.chr13/4763880-4763989
UCAUUAGCACAUGCAGAGCUUCUUGUAGCAUCCUGAUGGGUUAAAAUCCUGGUGGAGAUCAGGUUUUUAACCCUCUGCUUGUAUUGCCACAUGAGCAAACAGUGCUGA
...(((((((..((((((((......)))........(((((((((.((((((....)))))).)))))))))))))).(((.(((((....).)))))))))))))) ( -42.40)
>consensus
UUAUUGGCGAAAGGAAA____UGUGUAGUGU______GGGCUAGACUGUUGGUGGAGGCUGGCUUUUUAGCCCACUUGCUACACAUACUGCCAA_______AAGACUUGAAA_UGUUGAA
....(((((............(((((((((.......((((((((..((((((....))))))..))))))))...)))))))))...)))))........................... (-27.40 = -26.16 +  -1.24) 

	

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Consensus structure

Secondary structure graph

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Montain plot

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Dotplot

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