Structure #156259

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	-
Position	178,978,270 - 178,978,379
Number of sequences	5
Organisms	human, dog, mouse, rat, chicken
Mean pairwise identity	78.27
Columns	120
Mean single MFE	-39.73
Consensus MFE	-31.52
Combinations/base pair	38 / 26 = 1.46
SCI	0.79
z-score	-3.25
RNA class probability	0.9991

This structure is part of cluster 86486

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 5
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  78.27
 Mean single sequence MFE: -39.73
 Consensus MFE: -31.52
 Energy contribution: -29.60
 Covariance contribution:  -1.92
 Mean z-score:  -3.25
 Structure conservation index:   0.79
 SVM decision value:   3.37
 SVM RNA-class probability: 0.999100
 Prediction: RNA

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>hg17.chr5/178978379-178978270
ACCUAUGCUGAUUCUUACUAAAAGCAUAGGCUGGGGUAUUUAUUGGCGAAAGGAAAUGUGUAGUGUGGGCUGGACUGUUGGUGGAGGCUGGCUUUUUAGCCCACUUGCU
.(((.(((..((...((((...(((....)))..))))...))..)))..)))......((((.((((((((((..((..((....))..))..)))))))))))))). ( -41.00)
>canFam1.chr11/9911702-9911593
ACCUAUGCUGAUUCCUACUAAAAGCAUAGGCCUGGGGUAUUACUGGCGAAAUGAAAUGUGUAGUGUGGGCUAGACUGUUGGUGGAGGCUGGCUUUUUAGCCCACUUGCU
..(((((((.............)))))))(((.(........).)))............((((.((((((((((..((..((....))..))..)))))))))))))). ( -38.62)
>mm5.chr11/71626910-71627014
ACCUAUGCUGAUUCCUACUAAAAGCAUAGGCUGGGUACUGGCGAAAAGAAGUGUGUAGUGUGGGCUAGACUGUUGGUGGAGGCUGGCUUUUUAGCCCACUUGCU
.((((((((.............))))))))(((..((((..(.....).))))..))).((((((((((..((..((....))..))..))))))))))..... ( -37.92)
>rn3.chr10/74806804-74806909
UACCUAUGCUGAUUCCUACUAAAAGCAUAGGCUGGGUAUUGGCGAAAGGAAGUGUGUAGUGUGGGCUAGACUGUUGGUGGAGGCUGGCUUUUUAGCCCACUUGCU
..((((((((.............))))))))(((..((((..(....)..))))..))).((((((((((..((..((....))..))..))))))))))..... ( -39.12)
>galGal2.chr13/4763912-4764022
GCCUAUGCUGAAUCACUGAAGCAUAGGCUGGGUUCAUUAGCACAUGCAGAGCUUCUUGUAGCAUCCUGAUGGGUUAAAAUCCUGGUGGAGAUCAGGUUUUUAACCCUCU
(((((((((..........))))))))).((((......((....))...(((......))))))).((.(((((((((.((((((....)))))).))))))))))). ( -42.00)
>consensus
_ACCUAUGCUGAUUCCUACUAAAAGCAUAGGCUGGG____UUAUUGGCGAAAGGAAA____UGUGUAGUGU______GGGCUAGACUGUUGGUGGAGGCUGGCUUUUUAGCCCACUUGCU
...(((((((.............)))))))(((((........))))).............................((((((((..((((((....))))))..))))))))....... (-31.52 = -29.60 +  -1.92) 

	

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Consensus structure

Secondary structure graph

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Montain plot

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Dotplot

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