Structure #156264
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr5 |
| Strand | + |
| Position | 178,978,340 - 178,978,452 |
| Number of sequences | 5 |
| Organisms | human, dog, mouse, rat, chicken |
| Mean pairwise identity | 89.4 |
| Columns | 120 |
| Mean single MFE | -26.28 |
| Consensus MFE | -24.63 |
| Combinations/base pair | 33 / 31 = 1.06 |
| SCI | 0.94 |
| z-score | -2.71 |
| RNA class probability | 0.999879 |
This structure is part of cluster 86486
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 89.40 Mean single sequence MFE: -26.28 Consensus MFE: -24.63 Energy contribution: -24.71 Covariance contribution: 0.08 Mean z-score: -2.71 Structure conservation index: 0.94 SVM decision value: 4.36 SVM RNA-class probability: 0.999879 Prediction: RNA ###################################################################### >hg17.chr5/178978340-178978452 AUACCCCAGCCUAUGCUUUUAGUAAGAAUCAGCAUAGGUAAGCGCAUGCUUCAAUGAAAAAUAGUCACAAGCAAAGAGAAUAAAACCUUUUGUGACAAUUUCUUGAAAGCUA ........(((((((((.............)))))))))........(((((((.((((....(((((((.....(((........))))))))))..))))))).)))).. ( -25.92) >canFam1.chr11/9911663-9911775 UACCCCAGGCCUAUGCUUUUAGUAGGAAUCAGCAUAGGUAAGCGCAUGCUUCAAUGAAAAAUAGUCACAAGCAAAGAGAAUAAAACCUUUUGUGACAAUUUCUUGAAAGCUA ........((((((((((((.....)))..)))))))))........(((((((.((((....(((((((.....(((........))))))))))..))))))).)))).. ( -26.10) >mm5.chr11/71627091-71626978 CCCAGCCUAUGCUUUUAGUAGGAAUCAGCAUAGGUAAAAAAGCGCAUGCUUCAAUGAAAAAUAGUCACAAGCAAAGAGAAUAAAACCCUUUGUGACAAUUUCUUGAAAGCUA ....((((((((((((.....)))..)))))))))............(((((((.((((....((((((((.................))))))))..))))))).)))).. ( -25.43) >rn3.chr10/74806987-74806872 CCCAGCCUAUGCUUUUAGUAGGAAUCAGCAUAGGUAAAAAAAAGCGCAUGCUUCAAUGAAAAAUAGUCACAAGCAAAGAGAAUAAAACCCUUUGUGACAAUUUCUUGAAAGCUA ....((((((((((((.....)))..)))))))))..............(((((((.((((....((((((((.................))))))))..))))))).)))).. ( -25.43) >galGal2.chr13/4764100-4763989 ACCCAGCCUAUGCUUCAGUGAUUCAGCAUAGGCAAGAAGUGCAUGCUUCAAUGAAAAAUAGUCACAAGUAAAAUAGAAUAAAAACCCUUUGUGACAAUUUCUUGAAAGCUA .....(((((((((..(....)..)))))))))...........(((((((.((((....((((((((...................))))))))..))))))).)))).. ( -28.51) >consensus ____CCCAGCCUAUGCUUUUAGUAGGAAUCAGCAUAGGU___AA_AAGCGCAUGCUUCAAUGAAAAAUAGUCACAAGCAAAG_AGAAU_AAAACCCUUUGUGACAAUUUCUUGAAAGCUA ........((((((((((((.....)))..)))))))))..............(((((((.((((....((((((((...................))))))))..))))))).)))).. (-24.63 = -24.71 + 0.08)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
