Structure #156267
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr5 |
| Strand | - |
| Position | 178,978,340 - 178,978,452 |
| Number of sequences | 5 |
| Organisms | human, dog, mouse, rat, chicken |
| Mean pairwise identity | 89.4 |
| Columns | 120 |
| Mean single MFE | -31.78 |
| Consensus MFE | -25.62 |
| Combinations/base pair | 32 / 30 = 1.07 |
| SCI | 0.81 |
| z-score | -3.36 |
| RNA class probability | 0.998658 |
This structure is part of cluster 86486
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 89.40 Mean single sequence MFE: -31.78 Consensus MFE: -25.62 Energy contribution: -25.42 Covariance contribution: -0.20 Mean z-score: -3.36 Structure conservation index: 0.81 SVM decision value: 3.18 SVM RNA-class probability: 0.998658 Prediction: RNA ###################################################################### >hg17.chr5/178978452-178978340 UAGCUUUCAAGAAAUUGUCACAAAAGGUUUUAUUCUCUUUGCUUGUGACUAUUUUUCAUUGAAGCAUGCGCUUACCUAUGCUGAUUCUUACUAAAAGCAUAGGCUGGGGUAU ..((((.(((((((..(((((((((((........))))...)))))))....)))).)))))))((((.((..((((((((.............))))))))..)).)))) ( -34.22) >canFam1.chr11/9911775-9911663 UAGCUUUCAAGAAAUUGUCACAAAAGGUUUUAUUCUCUUUGCUUGUGACUAUUUUUCAUUGAAGCAUGCGCUUACCUAUGCUGAUUCCUACUAAAAGCAUAGGCCUGGGGUA ..((((.(((((((..(((((((((((........))))...)))))))....)))).))))))).(((.((..((((((((.............))))))))...)).))) ( -31.82) >mm5.chr11/71626978-71627091 UAGCUUUCAAGAAAUUGUCACAAAGGGUUUUAUUCUCUUUGCUUGUGACUAUUUUUCAUUGAAGCAUGCGCUUUUUUACCUAUGCUGAUUCCUACUAAAAGCAUAGGCUGGG ..((((.(((((((..(((((((((((.......))))....)))))))....)))).))))))).............((((((((.............))))))))..... ( -29.62) >rn3.chr10/74806872-74806987 UAGCUUUCAAGAAAUUGUCACAAAGGGUUUUAUUCUCUUUGCUUGUGACUAUUUUUCAUUGAAGCAUGCGCUUUUUUUUACCUAUGCUGAUUCCUACUAAAAGCAUAGGCUGGG ..((((.(((((((..(((((((((((.......))))....)))))))....)))).)))))))...............((((((((.............))))))))..... ( -29.62) >galGal2.chr13/4763989-4764100 UAGCUUUCAAGAAAUUGUCACAAAGGGUUUUUAUUCUAUUUUACUUGUGACUAUUUUUCAUUGAAGCAUGCACUUCUUGCCUAUGCUGAAUCACUGAAGCAUAGGCUGGGU ..((((.(((((((..((((((((((((....))))).......)))))))....)))).))))))).......(((.(((((((((..........))))))))).))). ( -33.61) >consensus UAGCUUUCAAGAAAUUGUCACAAAGGGUUUU_AUUCU_CUUUGCUUGUGACUAUUUUUCAUUGAAGCAUGCGCUU_UU___ACCUAUGCUGAUUCCUACUAAAAGCAUAGGCUGGG____ ..((((.(((((((..(((((((((((...........))))..)))))))....)))).)))))))...............((((((((.............))))))))......... (-25.62 = -25.42 + -0.20)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
