Structure #156268
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr5 |
| Strand | + |
| Position | 178,978,378 - 178,978,491 |
| Number of sequences | 5 |
| Organisms | human, dog, mouse, rat, chicken |
| Mean pairwise identity | 88.82 |
| Columns | 120 |
| Mean single MFE | -21.27 |
| Consensus MFE | -18.67 |
| Combinations/base pair | 23 / 23 = 1.00 |
| SCI | 0.88 |
| z-score | -2.17 |
| RNA class probability | 0.993084 |
This structure is part of cluster 86486
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 88.82 Mean single sequence MFE: -21.27 Consensus MFE: -18.67 Energy contribution: -18.67 Covariance contribution: -0.00 Mean z-score: -2.17 Structure conservation index: 0.88 SVM decision value: 2.37 SVM RNA-class probability: 0.993084 Prediction: RNA ###################################################################### >hg17.chr5/178978378-178978491 AAGCGCAUGCUUCAAUGAAAAAUAGUCACAAGCAAAGAGAAUAAAACCUUUUGUGACAAUUUCUUGAAAGCUAUGCUUAUUAAUACUAUGCAGAAUAUUUAUAUACAGCAAG ..(((((((((((((.((((....(((((((.....(((........))))))))))..))))))).)))).)))).........((....))..............))... ( -20.40) >canFam1.chr11/9911701-9911813 AAGCGCAUGCUUCAAUGAAAAAUAGUCACAAGCAAAGAGAAUAAAACCUUUUGUGACAAUUUCUUGAAAGCUAUGCUUAUUAAUACAUAUGCAGAAUAUAUAUACAGCAAG ..(((((((((((((.((((....(((((((.....(((........))))))))))..))))))).)))).))))......(((.((((.....)))).)))...))... ( -22.50) >mm5.chr11/71627129-71627013 AAAAAAGCGCAUGCUUCAAUGAAAAAUAGUCACAAGCAAAGAGAAUAAAACCCUUUGUGACAAUUUCUUGAAAGCUAUGCUUAUUAAUACAUAUGCAGAAUAUUUAUACAGCAAG ......(((((((((((((.((((....((((((((.................))))))))..))))))).)))).))))......(((.((((.....)))).)))...))... ( -21.93) >rn3.chr10/74807025-74806909 AAAAAAAGCGCAUGCUUCAAUGAAAAAUAGUCACAAGCAAAGAGAAUAAAACCCUUUGUGACAAUUUCUUGAAAGCUAUGCUUAUUAAUACAUAUGCAGAAUAUUUAUACAGCAAG .......(((((((((((((.((((....((((((((.................))))))))..))))))).)))).))))......(((.((((.....)))).)))...))... ( -21.93) >galGal2.chr13/4764131-4764021 AAGAAGUGCAUGCUUCAAUGAAAAAUAGUCACAAGUAAAAUAGAAUAAAAACCCUUUGUGACAAUUUCUUGAAAGCUAUGCUUAUCACAUGGAAGAUUAAUACAGUAAG ..((...(((((((((((.((((....((((((((...................))))))))..))))))).)))).))))...))....................... ( -19.61) >consensus __AA_AAGCGCAUGCUUCAAUGAAAAAUAGUCACAAGCAAAG_AGAAU_AAAACCCUUUGUGACAAUUUCUUGAAAGCUAUGCUUAUUAAUACAUAUGCAGAAUAUU__UAUACAGCAAG .........(((((((((((.((((....((((((((...................))))))))..))))))).)))).))))..................................... (-18.67 = -18.67 + -0.00)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
