Structure #156271

Summary

Genome/Assembly hg17
Chromosome/Contig chr5
Strand -
Position 178,978,378 - 178,978,491
Number of sequences 5
Organisms human, dog, mouse, rat, chicken
Mean pairwise identity 88.82
Columns 120
Mean single MFE -24.8
Consensus MFE -21.34
Combinations/base pair 37 / 33 = 1.12
SCI 0.86
z-score -2.45
RNA class probability 0.99693

This structure is part of cluster 86486

Alignment

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 5
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  88.82
 Mean single sequence MFE: -24.80
 Consensus MFE: -21.34
 Energy contribution: -20.86
 Covariance contribution:  -0.48
 Mean z-score:  -2.45
 Structure conservation index:   0.86
 SVM decision value:   2.77
 SVM RNA-class probability: 0.996930
 Prediction: RNA

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>hg17.chr5/178978491-178978378
CUUGCUGUAUAUAAAUAUUCUGCAUAGUAUUAAUAAGCAUAGCUUUCAAGAAAUUGUCACAAAAGGUUUUAUUCUCUUUGCUUGUGACUAUUUUUCAUUGAAGCAUGCGCUU
...((....(((.((((((......)))))).))).((((.((((.(((((((..(((((((((((........))))...)))))))....)))).))))))))))))).. ( -24.60)
>canFam1.chr11/9911813-9911701
CUUGCUGUAUAUAUAUUCUGCAUAUGUAUUAAUAAGCAUAGCUUUCAAGAAAUUGUCACAAAAGGUUUUAUUCUCUUUGCUUGUGACUAUUUUUCAUUGAAGCAUGCGCUU
...((.((((((((.......))))))))......((((.((((.(((((((..(((((((((((........))))...)))))))....)))).))))))))))))).. ( -26.20)
>mm5.chr11/71627013-71627129
CUUGCUGUAUAAAUAUUCUGCAUAUGUAUUAAUAAGCAUAGCUUUCAAGAAAUUGUCACAAAGGGUUUUAUUCUCUUUGCUUGUGACUAUUUUUCAUUGAAGCAUGCGCUUUUUU
...((.((((........(((.(((......))).)))..((((.(((((((..(((((((((((.......))))....)))))))....)))).)))))))))))))...... ( -25.40)
>rn3.chr10/74806909-74807025
CUUGCUGUAUAAAUAUUCUGCAUAUGUAUUAAUAAGCAUAGCUUUCAAGAAAUUGUCACAAAGGGUUUUAUUCUCUUUGCUUGUGACUAUUUUUCAUUGAAGCAUGCGCUUUUUUU
...((.((((........(((.(((......))).)))..((((.(((((((..(((((((((((.......))))....)))))))....)))).)))))))))))))....... ( -25.40)
>galGal2.chr13/4764021-4764131
CUUACUGUAUUAAUCUUCCAUGUGAUAAGCAUAGCUUUCAAGAAAUUGUCACAAAGGGUUUUUAUUCUAUUUUACUUGUGACUAUUUUUCAUUGAAGCAUGCACUUCUU
............(((........)))..((((.((((.(((((((..((((((((((((....))))).......)))))))....)))).)))))))))))....... ( -22.41)
>consensus
CUUGCUGUAUA__AAUAUUCUGCAUAUGUAUUAAUAAGCAUAGCUUUCAAGAAAUUGUCACAAAGGGUUUU_AUUCU_CUUUGCUUGUGACUAUUUUUCAUUGAAGCAUGCGCUU_UU__
..(((.((((....))))...))).............((((.((((.(((((((..(((((((((((...........))))..)))))))....)))).)))))))))))......... (-21.34 = -20.86 +  -0.48) 

	

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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