Structure #158469
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr6 |
| Strand | - |
| Position | 33,440,536 - 33,440,647 |
| Number of sequences | 4 |
| Organisms | human, dog, mouse, rat |
| Mean pairwise identity | 83.52 |
| Columns | 120 |
| Mean single MFE | -41.54 |
| Consensus MFE | -27.06 |
| Combinations/base pair | 29 / 24 = 1.21 |
| SCI | 0.65 |
| z-score | -1.56 |
| RNA class probability | 0.5 |
| Warning | Base composition out of range |
This structure is part of cluster 87789
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 83.52 Mean single sequence MFE: -41.54 Consensus MFE: -27.06 Energy contribution: -28.12 Covariance contribution: 1.06 Mean z-score: -1.56 Structure conservation index: 0.65 SVM decision value: -0.06 SVM RNA-class probability: 0.500000 Prediction: no RNA ###################################################################### >hg17.chr6/33440647-33440536 CUCCCCCCAGCUGUCUCACCCCCACUUUGUCCCCACUCUAGAGCAGGGAGGCAGUGGGGGAGGAGUUGUGUCUUGUCUUCUGUCUCCAUGUGGUUUUUGGGUGUUUUUCUU .....(((((..(((.((((((((((.(.((((..((....))..)))).).)))))))).((((..................)))).)).)))..))))).......... ( -36.57) >canFam1.chr2/76373325-76373215 UCUCCCCCAGCUGUCCCGCCCCCCAACGUCCCCACUCUAGGGCCAGGGGGGAGGUGGGGGAGGAGUUGUGUCUCGUCUUCUGUCUCCAUGUGGUUUUGGGUGUUUUUCUU .....(((((.....((((.((((...((((........))))..))))(((((..(((((.(((......))).)))))..)))))..))))..))))).......... ( -43.30) >mm5.chr4/134426403-134426286 GCCCCCCCAACUCCCUGCUGUCUCACCCCCACUAUGUCCCCCCUUAGGGCCAGGGAGGUGGUGGGGGAGGAGUUGUGUCUUGUCUUCUGUCUUCAUGUGGUUUUGGGUGUUUUUCUC .....(((((..(((((..(.(...((((((((((.(((((((...)))...)))).))))))))))(((((...........)))))).)..)).).))..))))).......... ( -43.10) >rn3.chr5/154760608-154760492 GCCCCCAAUUCCCUGCUGUCUCACCCCCCAUUAUGUCCCCCCUUAGGGCCAGGGAGGUGGUGGGGGAGGAGUUGUGUCUUGUCUUCUGUCUUCAUGUGGUUUUGGGUGUUUUUCUU ((.(((((..((..((...(((..((((((((((.(((((((...)))...)))).))))))))))..)))..)).....(.(....).).......))..))))).))....... ( -43.20) >consensus GCCCCCCCA_______GCUGUCUCACCCCC_ACUAUGUCCCCACUCA_GGGCCAGGGAGGUGGUGGGGGAGGAGUUGUGUCUUGUCUUCUGUCUCCAUGUGGUUUU_GGGUGUUUUUCUU .....(((.................(((((.(((((.(((((((....)))...)))).)))))))))).((((..................))))...........))).......... (-27.06 = -28.12 + 1.06)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
