Structure #158470

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr6
Strand	+
Position	33,440,576 - 33,440,687
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	81.9
Columns	120
Mean single MFE	-54.82
Consensus MFE	-37.66
Combinations/base pair	33 / 28 = 1.18
SCI	0.69
z-score	-3.24
RNA class probability	0.997155

This structure is part of cluster 87789

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  81.90
 Mean single sequence MFE: -54.82
 Consensus MFE: -37.66
 Energy contribution: -37.73
 Covariance contribution:   0.06
 Mean z-score:  -3.24
 Structure conservation index:   0.69
 SVM decision value:   2.81
 SVM RNA-class probability: 0.997155
 Prediction: RNA

######################################################################

>hg17.chr6/33440576-33440687
ACACAACUCCUCCCCCACUGCCUCCCUGCUCUAGAGUGGGGACAAAGUGGGGGUGAGACAGCUGGGGGGAGACCUGAACCUCAGUCCAGCCCUACAGGCUCCAGGCCUGCA
......(((..((((((((...((((..((....))..))))...)))))))).)))...((((((..(((........)))..))))))....(((((.....))))).. ( -54.80)
>canFam1.chr2/76373254-76373365
ACACAACUCCUCCCCCACCUCCCCCCUGGCCCUAGAGUGGGGACGUUGGGGGGCGGGACAGCUGGGGGAGACCUUGAGCCUCAGUCCAGCCCAGCAGGCUCCAGGCCUGUG
.((((....(((((((((((((((((...((((.....)))).....)))))).))).....)))))))).(((.((((((..((........)))))))).)))..)))) ( -53.40)
>mm5.chr4/134426325-134426443
ACACAACUCCUCCCCCACCACCUCCCUGGCCCUAAGGGGGGACAUAGUGGGGGUGAGACAGCAGGGAGUUGGGGGGGCCCUUGAACCUCAAUCCAGCCCUGCAGGCUCCAGGCCUGCA
...(((((((((((((((..(((((((.......))))))).....)))))))..........))))))))..(((((..(((.....)))....)))))((((((.....)))))). ( -57.10)
>rn3.chr5/154760531-154760648
ACACAACUCCUCCCCCACCACCUCCCUGGCCCUAAGGGGGGACAUAAUGGGGGGUGAGACAGCAGGGAAUUGGGGGCCCUUGAACCUCAAUCCAGCCCUGCAGGCUCCAGGCCUGCA
......(((.(((((((...(((((((.......)))))))......))))))).)))...((((((.(((((((.........)))))))....))))))((((.....))))... ( -54.00)
>consensus
ACACAACUCCUCCCCCACCACCUCCCUGGCCC_AAAGGGGGGACAUAGU_GGGGGUGAGACAGC_______UGGGGGGGCCCUUGAACCUCAAUCCAGCCCUGCAGGCUCCAGGCCUGCA
......(((..(((((....(((((((........)))))))........))))).)))..............((((.....(((.....))).....))))((((((.....)))))). (-37.66 = -37.73 +   0.06)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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