Structure #158476

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr6
Strand	+
Position	33,440,615 - 33,440,726
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	78.41
Columns	120
Mean single MFE	-55.3
Consensus MFE	-38.29
Combinations/base pair	36 / 32 = 1.12
SCI	0.69
z-score	-2.42
RNA class probability	0.990709

This structure is part of cluster 87789

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  78.41
 Mean single sequence MFE: -55.30
 Consensus MFE: -38.29
 Energy contribution: -39.60
 Covariance contribution:   1.31
 Mean z-score:  -2.42
 Structure conservation index:   0.69
 SVM decision value:   2.23
 SVM RNA-class probability: 0.990709
 Prediction: RNA

######################################################################

>hg17.chr6/33440615-33440726
GGACAAAGUGGGGGUGAGACAGCUGGGGGGAGACCUGAACCUCAGUCCAGCCCUACAGGCUCCAGGCCUGCAGGGAAGGAGGGUAACGGGGAGGCAGGGCCCAGCCCCCCA
........((((((.......((((((((....))....((((..(((..((((.(((((.....))))).))))..)))(.....)))))........)))))))))))) ( -50.91)
>canFam1.chr2/76373294-76373405
GGACGUUGGGGGGCGGGACAGCUGGGGGAGACCUUGAGCCUCAGUCCAGCCCAGCAGGCUCCAGGCCUGUGGGGAGCUGGGGGGGAGGGGGAGGCAGGGCCCACCCCCACG
...(((.(((((..(((.(.(((((((....))))...((((..((((((((.((((((.....))))))..)).))))))...))))....))).)..))).)))))))) ( -59.60)
>mm5.chr4/134426364-134426478
GGACAUAGUGGGGGUGAGACAGCAGGGAGUUGGGGGGGCCCUUGAACCUCAAUCCAGCCCUGCAGGCUCCAGGCCUGCAAGGAAGGGCCAUGGGGAGGCAGGGUCCAGCCCCUC
.........((((.((.(((.((..(((.((((((...........))))))))).))(((((...((((((((((........))))).)))))..)))))))))).)))).. ( -53.90)
>rn3.chr5/154760570-154760684
GGACAUAAUGGGGGGUGAGACAGCAGGGAAUUGGGGGCCCUUGAACCUCAAUCCAGCCCUGCAGGCUCCAGGCCUGCAAGAAAGGGCCAUGGGGAGGCAGGGCCCAGCCCCUCU
.........(((((((..(.......(((.((((((.........))))))))).(((((((...((((((((((........))))).)))))..))))))))..))))))). ( -56.80)
>consensus
GGACAUAGU_GGGGGUGAGACAGC_______UGGGGGGGCCCUUGAACCUCAAUCCAGCCCUGCAGGCUCCAGGCCUGCAAGGA____AGGGCCAUGGGGAGGCAGGGCCCAGCCCCUC_
..........((((((......))..........(((...(((((..(((((.(((..((((((((((.....))))))))))......)))...)))))...))))))))..))))... (-38.29 = -39.60 +   1.31)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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