Structure #158484

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr6
Strand	-
Position	33,440,615 - 33,440,726
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	78.41
Columns	120
Mean single MFE	-48.2
Consensus MFE	-35.1
Combinations/base pair	37 / 29 = 1.28
SCI	0.73
z-score	-2.11
RNA class probability	0.965649

This structure is part of cluster 87789

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  78.41
 Mean single sequence MFE: -48.20
 Consensus MFE: -35.10
 Energy contribution: -36.09
 Covariance contribution:   1.00
 Mean z-score:  -2.11
 Structure conservation index:   0.73
 SVM decision value:   1.58
 SVM RNA-class probability: 0.965649
 Prediction: RNA

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>hg17.chr6/33440726-33440615
UGGGGGGCUGGGCCCUGCCUCCCCGUUACCCUCCUUCCCUGCAGGCCUGGAGCCUGUAGGGCUGGACUGAGGUUCAGGUCUCCCCCCAGCUGUCUCACCCCCACUUUGUCC
(((((((..(((((..(((((..........(((..((((((((((.....))))))))))..)))..)))))...))))))))))))....................... ( -50.50)
>canFam1.chr2/76373405-76373294
CGUGGGGGUGGGCCCUGCCUCCCCCUCCCCCCCAGCUCCCCACAGGCCUGGAGCCUGCUGGGCUGGACUGAGGCUCAAGGUCUCCCCCAGCUGUCCCGCCCCCCAACGUCC
((((((((((((....(((((....(((..((((((.......((((.....))))))))))..)))..)))))....((......))......)))))))))..)))... ( -48.81)
>mm5.chr4/134426478-134426364
GAGGGGCUGGACCCUGCCUCCCCAUGGCCCUUCCUUGCAGGCCUGGAGCCUGCAGGGCUGGAUUGAGGUUCAAGGGCCCCCCCAACUCCCUGCUGUCUCACCCCCACUAUGUCC
..((((.(((((((((((.......)))((..((((((((((.....))))))))))..))....))).....(((....)))...........))).)).))))......... ( -44.80)
>rn3.chr5/154760684-154760570
AGAGGGGCUGGGCCCUGCCUCCCCAUGGCCCUUUCUUGCAGGCCUGGAGCCUGCAGGGCUGGAUUGAGGUUCAAGGGCCCCCAAUUCCCUGCUGUCUCACCCCCCAUUAUGUCC
(((((((..((((((((((((....(((((((.....((((((.....)))))))))))))....)))))...))))))).....))))).))..................... ( -48.70)
>consensus
_GAGGGGCUGGGCCCUGCCUCCCCAUGGCCCU____UCCCUGCAGGCCUGGAGCCUGCAGGGCUGGACUGAGGUUCAAGGGCCCCCCCA_______GCUGUCUCACCCCC_ACUAUGUCC
...((((..((((((((((((.(((............((((((((((.....)))))))))).)))...)))))...)))))))))))................................ (-35.10 = -36.09 +   1.00)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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