Structure #158490

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr6
Strand	+
Position	33,440,647 - 33,440,766
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	77.2
Columns	120
Mean single MFE	-61.97
Consensus MFE	-38.35
Combinations/base pair	36 / 33 = 1.09
SCI	0.62
z-score	-3.47
RNA class probability	0.999797

This structure is part of cluster 87789

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  77.20
 Mean single sequence MFE: -61.97
 Consensus MFE: -38.35
 Energy contribution: -41.60
 Covariance contribution:   3.25
 Mean z-score:  -3.47
 Structure conservation index:   0.62
 SVM decision value:   4.10
 SVM RNA-class probability: 0.999797
 Prediction: RNA

######################################################################

>hg17.chr6/33440647-33440766
ACCUGAACCUCAGUCCAGCCCUACAGGCUCCAGGCCUGCAGGGAAGGAGGGUAACGGGGAGGCAGGGCCCAGCCCCCCAGUGUGGGGAAACAGCUGAGGGAAGGCCCCCCUCAAAAGGC
.((((.((((...(((..((((.(((((.....))))).))))..)))))))..))))((((..(((((...(((..((((....(....).)))).)))..))))).))))....... ( -57.80)
>canFam1.chr2/76373325-76373440
CCUUGAGCCUCAGUCCAGCCCAGCAGGCUCCAGGCCUGUGGGGAGCUGGGGGGGAGGGGGAGGCAGGGCCCACCCCCACGUUGGAGAGGCUGAGGGAAGGCCCCCCUGGAAGGAC
((((.((((((...(((((((.((((((.....))))))..)).)))))(((((.(((..........))).)))))........)))))).((((.......))))..)))).. ( -59.00)
>mm5.chr4/134426403-134426511
CCUUGAACCUCAAUCCAGCCCUGCAGGCUCCAGGCCUGCAAGGAAGGGCCAUGGGGAGGCAGGGUCCAGCCCCUCUCGGGGAGGGGCUGAGGGGAGGCCCCGAGGGAC
(((((..((((...((.(((((((...((((((((((........))))).)))))..))))))).(((((((((.....))))))))).)).))))...)))))... ( -64.60)
>rn3.chr5/154760608-154760718
CCUUGAACCUCAAUCCAGCCCUGCAGGCUCCAGGCCUGCAAGAAAGGGCCAUGGGGAGGCAGGGCCCAGCCCCUCUGUGGGGAGGGGCUGAGGGGAGGCCCCUGAGGGAC
.......((((......(((((((...((((((((((........))))).)))))..))))))).((((((((((....))))))))))(((((...)))))))))... ( -66.50)
>consensus
CCUUGAACCUCAAUCCAGCCCUGCAGGCUCCAGGCCUGCAAGGA____AGGGCCAUGGGGAGGCAGGGCCCAGCCCCUC_GU___GGGGAGGGGCUGAGGGAAGGCCCC___CGAAGGAC
.(((...(((((((((.(((((((...((((((((((............))))).)))))..)))))))....((((........))))..)))))))))..)))............... (-38.35 = -41.60 +   3.25)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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