Structure #158493

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr6
Strand	-
Position	33,440,647 - 33,440,766
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	77.2
Columns	120
Mean single MFE	-58.4
Consensus MFE	-43.88
Combinations/base pair	46 / 35 = 1.31
SCI	0.75
z-score	-3.1
RNA class probability	0.999799

This structure is part of cluster 87789

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  77.20
 Mean single sequence MFE: -58.40
 Consensus MFE: -43.88
 Energy contribution: -44.62
 Covariance contribution:   0.75
 Mean z-score:  -3.10
 Structure conservation index:   0.75
 SVM decision value:   4.11
 SVM RNA-class probability: 0.999799
 Prediction: RNA

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>hg17.chr6/33440766-33440647
GCCUUUUGAGGGGGGCCUUCCCUCAGCUGUUUCCCCACACUGGGGGGCUGGGCCCUGCCUCCCCGUUACCCUCCUUCCCUGCAGGCCUGGAGCCUGUAGGGCUGGACUGAGGUUCAGGU
.......(((((((((((((((((((.(((......)))))))))))..))))))).)))).((...(((((((..((((((((((.....))))))))))..)))..).)))...)). ( -62.20)
>canFam1.chr2/76373440-76373325
GUCCUUCCAGGGGGGCCUUCCCUCAGCCUCUCCAACGUGGGGGUGGGCCCUGCCUCCCCCUCCCCCCCAGCUCCCCACAGGCCUGGAGCCUGCUGGGCUGGACUGAGGCUCAAGG
..((((...(((((.....)))))((((((......(.(((((.((((...))))))))).)....(((((((....(((((.....)))))..)))))))...)))))).)))) ( -53.80)
>mm5.chr4/134426511-134426403
GUCCCUCGGGGCCUCCCCUCAGCCCCUCCCCGAGAGGGGCUGGACCCUGCCUCCCCAUGGCCCUUCCUUGCAGGCCUGGAGCCUGCAGGGCUGGAUUGAGGUUCAAGG
(..((((((((...))))((((((((((.....)))))))))).....(((.......)))((..((((((((((.....))))))))))..))...))))..).... ( -57.30)
>rn3.chr5/154760718-154760608
GUCCCUCAGGGGCCUCCCCUCAGCCCCUCCCCACAGAGGGGCUGGGCCCUGCCUCCCCAUGGCCCUUUCUUGCAGGCCUGGAGCCUGCAGGGCUGGAUUGAGGUUCAAGG
(..(((((((((((......(((((((((......)))))))))))))))(((.......)))((..((((((((((.....))))))))))..))..)))))..).... ( -60.30)
>consensus
GUCCCUCG___GGGGCCUCCCCUCAGCCCCUCCCC___AC_GAGGGGCUGGGCCCUGCCUCCCCAUGGCCCU____UCCCUGCAGGCCUGGAGCCUGCAGGGCUGGACUGAGGUUCAAGG
(..((((..(((((((.....(((((((((((.........)))))))))))....)))))))......((......((((((((((.....))))))))))..))...))))..).... (-43.88 = -44.62 +   0.75)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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