Structure #158707

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr6
Strand	-
Position	35,568,107 - 35,568,211
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	72.12
Columns	120
Mean single MFE	-45.82
Consensus MFE	-27.79
Combinations/base pair	35 / 28 = 1.25
SCI	0.61
z-score	-1.92
RNA class probability	0.959676

This structure is part of cluster 87908

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  72.12
 Mean single sequence MFE: -45.82
 Consensus MFE: -27.79
 Energy contribution: -29.98
 Covariance contribution:   2.19
 Mean z-score:  -1.92
 Structure conservation index:   0.61
 SVM decision value:   1.49
 SVM RNA-class probability: 0.959676
 Prediction: RNA

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>hg17.chr6/35568211-35568107
GGGCUGGAGGUGGGGGAGACAGAUACAUCCCUACUUGCUCUGCUGCCCCAGAGCAUGGCUACUUCUAGGGUGGGAGCUUCUGGCAGCUGGAGAACAGCUGGCCC
((((..(((((((((..(.......)..)))))))).((((((((((...((((....(((((.....)))))..))))..)))))).)))).....)..)))) ( -44.80)
>canFam1.chr12/7549688-7549583
GUGCUGGAGGCAGACACCAUCCCCCUCCUGCCCCCUCUCCGGUCCCACCCGGAGCAUGGCUACUUCUAGGGUGGGAGCCUCUGGCAGCUGGAGAACAGCUGGCCC
..((..(((((.....((((((.......(((....((((((......))))))...)))........))))))..)))))..))(((((.....)))))..... ( -46.86)
>mm5.chr17/26935420-26935302
UGACUGGAGAUGGGGGAGACAUACAGCAUCCCCACCCCCUCCCCCUGCCCAUUCUGGUCCCAACCAGAGCUUGGCCACUUGUAGGGUGGGAGACUCUGGCAGCUGGAGAACAGCUGGC
...(..(((...(((((..(.....)..))))).....(((((((((((..(((((((....)))))))...)))........))).))))).)))..)((((((.....)))))).. ( -49.20)
>rn3.chr20/6587071-6586962
AGACUGGAGGCAUAAAACAUCUCUACCCCCUCCCCUAGCCCAUUCUGGUCCUAACCAGAGCUUGGCCACUUGUAGGGUGGGAGCCUCUGGCAGCUGGAGAACAGCUGGC
...(..(((((........((.((((((.........(((..(((((((....)))))))...)))........)))))))))))))..)((((((.....)))))).. ( -42.43)
>consensus
GGACUGGAGG_________CAGACA_CAUCCCCACCCCCUCCCC_UGCCC_____GGUCCCAACCAGAGCAUGGCCACUUCUAGGGUGGGAGCCUCUGGCAGCUGGAGAACAGCUGGC__
...(..((((....(....)..........(((((((.........(((..((((((......))))))...)))........)))))))..))))..)((((((.....)))))).... (-27.79 = -29.98 +   2.19) 

	

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Consensus structure

Secondary structure graph

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Montain plot

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Dotplot

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