Structure #158726

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr6
Strand	+
Position	35,568,251 - 35,568,364
Number of sequences	2
Organisms	human, dog
Mean pairwise identity	78.15
Columns	119
Mean single MFE	-52.7
Consensus MFE	-44.65
Combinations/base pair	42 / 38 = 1.11
SCI	0.85
z-score	-3.28
RNA class probability	0.999043

This structure is part of cluster 87908

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 2
 Slice: 1 to 119
 Columns: 119
 Strand: +
 Mean pairwise identity:  78.15
 Mean single sequence MFE: -52.70
 Consensus MFE: -44.65
 Energy contribution: -45.90
 Covariance contribution:   1.25
 Mean z-score:  -3.28
 Structure conservation index:   0.85
 SVM decision value:   3.34
 SVM RNA-class probability: 0.999043
 Prediction: RNA

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>hg17.chr6/35568251-35568364
CAGGCUGGGGAGGGCUUCCCUCCUUCCUGGAACAGGGUCUCAAUUUUUACAGGAGGAAGCAAUUUGCAGAGCCCACUAGGAGGGAGGUGGGGGCCCCUCCACUCUCUCCCCAC
.....(((((((((.....(((((((((((....(((.(((..(((((....))))).((.....)).)))))).)))))))))))((((((....)))))).))))))))). ( -54.30)
>canFam1.chr12/7549728-7549839
CAGGCUGGGGAGGGAGUACCCUCCUCCCUGGAGCAGGGUAGAGAUUUUUACAGGAGGAAGCAAUUUGCAGAGCCCACUAGGAGGGAGGUGGGGAGGCCUCCUCCCCGCUCU
..(((.(((((((..((.(((.(((((((..((..((((.....(((((....))))).((.....))...)))).))...))))))).)))...))..)))))))))).. ( -51.10)
>consensus
CAGGCUGGGGAGGGAGU_CCCUCCUCCCUGGAACAGGGUAGAAAUUUUUACAGGAGGAAGCAAUUUGCAGAGCCCACUAGGAGGGAGGUGGGGA_____CCCCCCCACUCU________
((((..((((((((....)))))))))))).....((((.....(((((....))))).((.....))...))))....((((((((.(((((((.....))))))))))))))).... (-44.65 = -45.90 +   1.25) 

	

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Consensus structure

Secondary structure graph

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Montain plot

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Dotplot

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