Structure #158734

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr6
Strand	-
Position	35,568,290 - 35,568,396
Number of sequences	2
Organisms	human, dog
Mean pairwise identity	73.87
Columns	111
Mean single MFE	-41.73
Consensus MFE	-26.65
Combinations/base pair	33 / 30 = 1.10
SCI	0.64
z-score	-3.64
RNA class probability	0.99849

This structure is part of cluster 87908

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 2
 Slice: 1 to 111
 Columns: 111
 Strand: +
 Mean pairwise identity:  73.87
 Mean single sequence MFE: -41.73
 Consensus MFE: -26.65
 Energy contribution: -28.65
 Covariance contribution:   2.00
 Mean z-score:  -3.64
 Structure conservation index:   0.64
 SVM decision value:   3.12
 SVM RNA-class probability: 0.998490
 Prediction: RNA

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>hg17.chr6/35568396-35568290
AAUUGGAAGCACAUUAAUAAGCAGGGCGGGGGGUGGGGAGAGAGUGGAGGGGCCCCCACCUCCCUCCUAGUGGGCUCUGCAAAUUGCUUCCUCCUGUAAAAAUUGA
....(((((((.(((.....((((((((((((((((((...............))))))))))).((....))))))))).))))))))))............... ( -46.36)
>canFam1.chr12/7549864-7549768
AAUUGGAAGCACAUUAAUAAGUGGGAGAGCGGGGAGGAGGCCUCCCCACCUCCCUCCUAGUGGGCUCUGCAAAUUGCUUCCUCCUGUAAAAAUCUC
....(((((((((((....))))(.((((((((((((.((.....)).)))))))((....))))))).)....)))))))............... ( -37.10)
>consensus
AAUUGGAAGCACAUUAAUAAGCAGG_______________AGAGCGGAGAGG_____CCCCCACCUCCCUCCUAGUGGGCUCUGCAAAUUGCUUCCUCCUGUAAAAAUCGA
....(((((((.(((.....(((((((............(((.((((((((.....)))))))))))...((....))))))))).))))))))))............... (-26.65 = -28.65 +   2.00) 

	

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Consensus structure

Secondary structure graph

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Montain plot

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Dotplot

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