Structure #161234
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr6 |
| Strand | - |
| Position | 74,944,463 - 74,944,614 |
| Number of sequences | 4 |
| Organisms | human, mouse, rat, dog |
| Mean pairwise identity | 86.28 |
| Columns | 152 |
| Mean single MFE | -36.36 |
| Consensus MFE | -24.01 |
| Combinations/base pair | 39 / 33 = 1.18 |
| SCI | 0.66 |
| z-score | -1.86 |
| RNA class probability | 0.650531 |
This structure is part of cluster 89324
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 152 Columns: 152 Strand: + Mean pairwise identity: 86.28 Mean single sequence MFE: -36.36 Consensus MFE: -24.01 Energy contribution: -24.32 Covariance contribution: 0.31 Mean z-score: -1.86 Structure conservation index: 0.66 SVM decision value: 0.24 SVM RNA-class probability: 0.650531 Prediction: RNA ###################################################################### >hg17.chr6/74944614-74944463 AAUGUUUUUGCUUCCAUCUAGACCUAAUUCUGAGCUAUGCACUGAUGACACUGUCCAGACUAUAAUGCAGAUGGGAUUAGAGACAAGGAAUGUCUAUAAUCACAUACACAGGCACUCUUACACAAAAGAAGGCCUAUAAUCCAAUAUAGUC ..((((((((.((((((((.........((((..(..((((....)).))..)..)))).........)))))))).)))))))).(((((((........))))....((((..((((......))))..))))....)))......... ( -36.17) >mm5.chr9/44828597-44828748 AAUGUUUUUGCUUCCAUCUGGACCUAGUUUUAGCAAUGUCAUCGAUGACACUGCCCAGACUAUAAUGCAGAUGGAAUUAGAGGAAAGGAAUGUUUAUAACCACACACACAAUUGGGCUUGCACAACAGAAGGCCUUUAAUCCAAUAUAGUC ....((((((.(((((((((.(..((((((..(((.(((((....))))).)))..))))))...).))))))))).))))))...(((.(((........))).........((((((.(......).))))))....)))......... ( -38.40) >rn3.chr8/45142076-45142227 AAUGUUUUUGUUUCCAUCUGGACCCAGUUUUAGCAAUGUCAUUGAUGACACUGCCCAGACUAUAAUGCAGAUGGAAUUAGAGGAAAGGAAUGUCUACAGCCACACACACAAUUGAGCUUGCACAACAGAAGGCCUCUAAUCCAAUAGAGUC .....(((((((((((((((.(...(((((..(((.(((((....))))).)))..)))))....).))))))))((((((((.......(((.((.(((((..........)).))))).)))........))))))))..))))))).. ( -37.46) >canFam1.chr12/36432946-36433098 AAUGUUUUUACUUCCAUCUGGACUGAAUUCUGAGCUAUGUCAAUGAUGACACUGUCCAGACUAUAAUGCAGAUGGGAUUAGAGAAAAGGAAUGCUUAUAAUCACACACACAAGUGCUUUUAUACAACAGAAGACCUAUAAUCCAAUAUAGUC ....((((((.(((((((((.(.((.(.((((..(..(((((....)))))..)..)))).).)).).))))))))).))))))...(((.............(((......)))(((((.......)))))........)))......... ( -33.40) >consensus AAUGUUUUUGCUUCCAUCUGGACCUAAUUCU_AGCAAUGUCAUUGAUGACACUGCCCAGACUAUAAUGCAGAUGGAAUUAGAGAAAAGGAAUGUCUAUAACCACACACACAAGUGCGCUUACACAACAGAAGGCCUAUAAUCCAAUAUAGUC ....((((((.(((((((((.(......((((.(((.(((((....))))).))).))))......).))))))))).))))))..................................................(((((......))))).. (-24.01 = -24.32 + 0.31)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
